Browse Element(s) Details


Os.11604.1.S1_at

Description gb:AK102709.1
DB_XREF= gi:32987918
TID=Os.11604.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.11604 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative leucine-rich repeat protein (OSJNBa0095C07.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033104H23, full insert sequence.
FL= gb:AK102709.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4219010/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42130Os.21932.1.S1_at11/1110+22339832..22342131no apical meristem, putative, expressed
LOC_Os10g42150Os.9540.2.S1_at11/1110+22344952..22346899transposon protein, putative, unclassified, expressed
LOC_Os10g42160Os.48027.1.S1_at11/1110+22347537..22349469transposon protein, putative, unclassified, expressed
LOC_Os10g42160Os.48027.1.S1_x_at11/1110+22347537..22349469transposon protein, putative, unclassified, expressed
LOC_Os10g42170Os.46615.1.S1_at11/1110+22350399..22352513expressed protein
LOC_Os10g42180Os.46883.1.S1_at11/1110+22352591..22355066Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os10g42190Os.11604.2.S1_at11/1110+22361103..22365459Leucine Rich Repeat family protein, expressed
LOC_Os10g42190Os.11604.1.S1_at10/1110+22361103..22365459Leucine Rich Repeat family protein, expressed
LOC_Os10g42190Os.49252.1.S1_x_at1/1110+22361103..22365459Leucine Rich Repeat family protein, expressed
LOC_Os10g42190Os.46673.1.S1_x_at1/1110+22361103..22365459Leucine Rich Repeat family protein, expressed
LOC_Os10g42196Os.23268.1.S1_at11/1110+22369432..22377421expressed protein
LOC_Os10g42196Os.23268.1.S2_at11/1110+22369432..22377421expressed protein
LOC_Os10g42202NANA10+22384303..22389591hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11604.1.S1_at--139--3391Chr10:22364402..22364426 (25 bp)
CAGCTGCGCAGATTAGTCCCTGAAG
LOC_Os10g42190
Os.11604.1.S1_at--719--1251Chr10:22364411..22364435 (25 bp)
AGATTAGTCCCTGAAGCTCCATAAG
LOC_Os10g42190
Os.11604.1.S1_at--618--8991NONE
TGAAGCTCCATAAGGTACACCGCAA
NONE
Os.11604.1.S1_at--541--7831Chr10:22365173..22365197 (25 bp)
GGTACACCGCAATATATTTTTCAAG
LOC_Os10g42190
Os.11604.1.S1_at--676--10191Chr10:22365185..22365209 (25 bp)
TATATTTTTCAAGGCCGCTACACCA
LOC_Os10g42190
Os.11604.1.S1_at--1123--4511Chr10:22365198..22365222 (25 bp)
GCCGCTACACCATCCTGAAAATATT
LOC_Os10g42190
Os.11604.1.S1_at--974--9591Chr10:22365247..22365271 (25 bp)
TCATATTGCTATGCTCCAAGACACT
LOC_Os10g42190
Os.11604.1.S1_at--769--2191Chr10:22365325..22365349 (25 bp)
ACAAATCTTAGTTCTGTTCAGCAAG
LOC_Os10g42190
Os.11604.1.S1_at--151--8791Chr10:22365339..22365363 (25 bp)
TGTTCAGCAAGTCTATTGCATCAGA
LOC_Os10g42190
Os.11604.1.S1_at--1001--51Chr10:22365353..22365377 (25 bp)
ATTGCATCAGAATTTGACCTATTGG
LOC_Os10g42190
Os.11604.1.S1_at--132--5831Chr10:22365368..22365392 (25 bp)
GACCTATTGGGTCTAATGGTTTTGT
LOC_Os10g42190
Target Sequence 
CAGCTGCGCAGATTAGTCCCTGAAGCTCCATAAGGTACACCGCAATATATTTTTCAAGGCCGCTACACCATCCTGAAAAT
ATTGATAATGTTTCAAAATAAACTTCATCATATTGCTATGCTCCAAGACACTTGTAGAAATACAAACATGGTTCTCTACA
GACATTTTATTTACTTATGCAAACAACAAATCTTAGTTCTGTTCAGCAAGTCTATTGCATCAGAATTTGACCTATTGGGT
CTAATGGTTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11604.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis