Browse Element(s) Details


Os.23268.1.S2_at

Description gb:AK062550.1
DB_XREF= gi:32972568
TID=Os.23268.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23268 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative DNA-binding protein (OSJNBa0095C07.35), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-104-G12, full insert sequence.
FL= gb:AK062550.1 gb:AK067954.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4219611/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42150Os.9540.2.S1_at11/1110+22344952..22346899transposon protein, putative, unclassified, expressed
LOC_Os10g42160Os.48027.1.S1_at11/1110+22347537..22349469transposon protein, putative, unclassified, expressed
LOC_Os10g42160Os.48027.1.S1_x_at11/1110+22347537..22349469transposon protein, putative, unclassified, expressed
LOC_Os10g42170Os.46615.1.S1_at11/1110+22350399..22352513expressed protein
LOC_Os10g42180Os.46883.1.S1_at11/1110+22352591..22355066Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os10g42190Os.11604.2.S1_at11/1110+22361103..22365459Leucine Rich Repeat family protein, expressed
LOC_Os10g42190Os.11604.1.S1_at10/1110+22361103..22365459Leucine Rich Repeat family protein, expressed
LOC_Os10g42190Os.49252.1.S1_x_at1/1110+22361103..22365459Leucine Rich Repeat family protein, expressed
LOC_Os10g42190Os.46673.1.S1_x_at1/1110+22361103..22365459Leucine Rich Repeat family protein, expressed
LOC_Os10g42196Os.23268.1.S1_at11/1110+22369432..22377421expressed protein
LOC_Os10g42196Os.23268.1.S2_at11/1110+22369432..22377421expressed protein
LOC_Os10g42202NANA10+22384303..22389591hypothetical protein
LOC_Os10g42210Os.2764.1.S1_s_at11/1110+22400553..224048513-hydroxyisobutyryl-coenzyme A hydrolase, putative
LOC_Os10g42210Os.2764.2.S1_x_at7/1110+22400553..224048513-hydroxyisobutyryl-coenzyme A hydrolase, putative

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23268.1.S2_at--537--10831Chr10:22370004..22370028 (25 bp)
TTGGTAGGGTTCCAGCAGATCCCTG
LOC_Os10g42196
Os.23268.1.S2_at--767--4251Chr10:22369983..22370007 (25 bp)
CCTGTTCTCCAACTAAACCAATCTT
LOC_Os10g42196
Os.23268.1.S2_at--323--791Chr10:22369953..22369977 (25 bp)
ATGTGATCCATGTCCTATCTTCAGA
LOC_Os10g42196
Os.23268.1.S2_at--156--1311Chr10:22369931..22369955 (25 bp)
AGATGATGAAGACTCCCCAGAACCT
LOC_Os10g42196
Os.23268.1.S2_at--838--9911Chr10:22369854..22369878 (25 bp)
TACTGTCACTGTCCCTTTCTATGGC
LOC_Os10g42196
Os.23268.1.S2_at--69--991Chr10:22369796..22369820 (25 bp)
AGGAGATGATGGACCGCTGTCTCTG
LOC_Os10g42196
Os.23268.1.S2_at--427--8331Chr10:22369764..22369788 (25 bp)
GGCTCCCTGGTGTAGTGACTAGCAA
LOC_Os10g42196
Os.23268.1.S2_at--142--5711Chr10:22369748..22369772 (25 bp)
GACTAGCAACCAGGCTCTTGAGATG
LOC_Os10g42196
Os.23268.1.S2_at--905--5971Chr10:22369708..22369732 (25 bp)
GAGAAACCTGGCATGAACACTTCAT
LOC_Os10g42196
Os.23268.1.S2_at--705--2471Chr10:22369693..22369717 (25 bp)
AACACTTCATTGCTTCTCTAGATAT
LOC_Os10g42196
Os.23268.1.S2_at--309--10211Chr10:22369576..22369600 (25 bp)
TATTTCACTGTTCTATGCATCTGGT
LOC_Os10g42196
Target Sequence 
TTGGTAGGGTTCCAGCAGATCCCTGTTCTCCAACTAAACCAATCTTGGATCATGTGATCCATGTCCTATCTTCAGATGAT
GAAGACTCCCCAGAACCTCGTAATAATCTGAATAAGACATCACTGAAGGAAGAAGAGGGCCCTTCTCCTCTACTGTCACT
GTCCCTTTCTATGGCCTCAAAGAAGCATAATCTTACCGGTTNTGATACAGGAGATGATGGACCGCTGTCTCTGTCTCTTG
GGCTCCCTGGTGTAGTGACTAGCAACCAGGCTCTTGAGATGAAGCAGTTTCTGCCAGAGAAACCTGGCATGAACACTTCA
TTGCTTCTCTAGATATTTGAGTGTACAGTTTTGTGCTGTGTTTTACTTTATGGGGTTTAGACAGGGTAGTAGTATGGTAT
AGCTGTTAAATTATGGAAACCTTTGGTTTATTTCACTGTTCTATGCATCTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23268.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis