Browse Element(s) Details


Os.46883.1.S1_at

Description gb:AK073002.1
DB_XREF= gi:32983025
TID=Os.46883.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.46883 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0095C07.34), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023150J20, full insert sequence.
FL= gb:AK073002.1 gb:AK105742.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4218011/11Uncharacterized protein family UPF0005 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42130Os.21932.1.S1_at11/1110+22339832..22342131no apical meristem, putative, expressed
LOC_Os10g42150Os.9540.2.S1_at11/1110+22344952..22346899transposon protein, putative, unclassified, expressed
LOC_Os10g42160Os.48027.1.S1_at11/1110+22347537..22349469transposon protein, putative, unclassified, expressed
LOC_Os10g42160Os.48027.1.S1_x_at11/1110+22347537..22349469transposon protein, putative, unclassified, expressed
LOC_Os10g42170Os.46615.1.S1_at11/1110+22350399..22352513expressed protein
LOC_Os10g42180Os.46883.1.S1_at11/1110+22352591..22355066Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os10g42190Os.11604.2.S1_at11/1110+22361103..22365459Leucine Rich Repeat family protein, expressed
LOC_Os10g42190Os.11604.1.S1_at10/1110+22361103..22365459Leucine Rich Repeat family protein, expressed
LOC_Os10g42190Os.49252.1.S1_x_at1/1110+22361103..22365459Leucine Rich Repeat family protein, expressed
LOC_Os10g42190Os.46673.1.S1_x_at1/1110+22361103..22365459Leucine Rich Repeat family protein, expressed
LOC_Os10g42196Os.23268.1.S1_at11/1110+22369432..22377421expressed protein
LOC_Os10g42196Os.23268.1.S2_at11/1110+22369432..22377421expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46883.1.S1_at--832--1431Chr10:22353157..22353181 (25 bp)
AGAACTACTCTACCATCATTCAAGA
LOC_Os10g42180
Os.46883.1.S1_at--284--6231Chr10:22353130..22353154 (25 bp)
GATGGCACATCCCTATTAGAAAGGA
LOC_Os10g42180
Os.46883.1.S1_at--1017--4411Chr10:22353034..22353058 (25 bp)
GCCATGACAAGCCTTGAGTTCTCAG
LOC_Os10g42180
Os.46883.1.S1_at--439--1451Chr10:22353011..22353035 (25 bp)
AGAAGCACTTCCATTCGCTGCGTTT
LOC_Os10g42180
Os.46883.1.S1_at--255--3831Chr10:22352994..22353018 (25 bp)
CTGCGTTTGCTTCATTGTTGGTAGA
LOC_Os10g42180
Os.46883.1.S1_at--583--5211Chr10:22352902..22352926 (25 bp)
GAATTCACTGGACATGACTATCTGA
LOC_Os10g42180
Os.46883.1.S1_at--1102--471Chr10:22352883..22352907 (25 bp)
ATCTGACCATTGATCTTACTTCCAA
LOC_Os10g42180
Os.46883.1.S1_at--1097--4631Chr10:22352835..22352859 (25 bp)
GCGTACCATTAGACAGCCACACAAT
LOC_Os10g42180
Os.46883.1.S1_at--230--2191Chr10:22352817..22352841 (25 bp)
ACACAATTTCCACTGCAGCTGAGTA
LOC_Os10g42180
Os.46883.1.S1_at--796--6211Chr10:22352708..22352732 (25 bp)
GAGGCTGTGATTCCCAATAAATGTT
LOC_Os10g42180
Os.46883.1.S1_at--820--5031Chr10:22352603..22352627 (25 bp)
GCAGAAAGTACTCATGCTTTTCCCC
LOC_Os10g42180
Target Sequence 
AGAACTACTCTACCATCATTCAAGACTGATGGCACATCCCTATTAGAAAGGAGGAATACAAAAGCAGACCAACCATCAGA
ACGGAATGAGCGGGGCACATTAAGGCCAACACTAAGTAAGATAGCCATGACAAGCCTTGAGTTCTCAGAAGCACTTCCAT
TCGCTGCGTTTGCTTCATTGTTGGTAGAAATGGTAGTTCGGCTGGAGATGGTTATTGAAGAAGTGAAGGAACTGGAGAGA
GCAGCAAATTTTAGAGAATTCACTGGACATGACTATCTGACCATTGATCTTACTTCCAATGACAAGATGAGAAACCCAAA
TGGCGTACCATTAGACAGCCACACAATTTCCACTGCAGCTGAGTAAGTACTGNATAATAGATCAAATCAGTAGATGATCA
CTCTGAAGCAGATATGTATTTCTTTTTGGACTAAGAAAATATGGCCTGTGAGGCTGTGATTCCCAATAAATGTTGTTAGA
ATGACAACTCATAAAAAAACAATATTAAACCTACAGGATGTTTATCGGAGTTGGATGATGTAAAAAAAATTTCAGCAGAA
AGTACTCATGCTTTTCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46883.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis