Browse Element(s) Details


Os.21932.1.S1_at

Description gb:AK110684.1
DB_XREF= gi:32995893
TID=Os.21932.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21932 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative NAM (no apical meristem) protein (OSJNBa0095C07.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-169-H07, full insert sequence.
FL= gb:AK110684.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4213011/11no apical meristem, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42100Os.12158.1.S2_at11/1110+22311234..22317103Pyruvate kinase isozyme G, chloroplast precursor, putative, expressed
LOC_Os10g42100Os.12158.1.S1_at11/1110+22311234..22317103Pyruvate kinase isozyme G, chloroplast precursor, putative, expressed
LOC_Os10g42110Os.46089.1.S1_at11/1110+22320335..22324577protein kinase family protein, putative, expressed
LOC_Os10g42130Os.21932.1.S1_at11/1110+22339832..22342131no apical meristem, putative, expressed
LOC_Os10g42150Os.9540.2.S1_at11/1110+22344952..22346899transposon protein, putative, unclassified, expressed
LOC_Os10g42160Os.48027.1.S1_at11/1110+22347537..22349469transposon protein, putative, unclassified, expressed
LOC_Os10g42160Os.48027.1.S1_x_at11/1110+22347537..22349469transposon protein, putative, unclassified, expressed
LOC_Os10g42170Os.46615.1.S1_at11/1110+22350399..22352513expressed protein
LOC_Os10g42180Os.46883.1.S1_at11/1110+22352591..22355066Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os10g42190Os.11604.2.S1_at11/1110+22361103..22365459Leucine Rich Repeat family protein, expressed
LOC_Os10g42190Os.11604.1.S1_at10/1110+22361103..22365459Leucine Rich Repeat family protein, expressed
LOC_Os10g42190Os.49252.1.S1_x_at1/1110+22361103..22365459Leucine Rich Repeat family protein, expressed
LOC_Os10g42190Os.46673.1.S1_x_at1/1110+22361103..22365459Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21932.1.S1_at--417--4731Chr10:22341565..22341589 (25 bp)
GCTGTGCATGCCTCAGACTCAGGAC
LOC_Os10g42130
Os.21932.1.S1_at--261--4291Chr10:22341629..22341653 (25 bp)
CCTCTCTACGGCGACGTCATGGGAA
LOC_Os10g42130
Os.21932.1.S1_at--93--2111Chr10:22341807..22341831 (25 bp)
ACATGTCCGTCTTCTGAACGAGTCA
LOC_Os10g42130
Os.21932.1.S1_at--665--6091Chr10:22341826..22341850 (25 bp)
GAGTCAACCATGACACGTGTGCTCC
LOC_Os10g42130
Os.21932.1.S1_at--833--9031Chr10:22341845..22341869 (25 bp)
TGCTCCCGGGTTAGTTACACATGGC
LOC_Os10g42130
Os.21932.1.S1_at--613--4671Chr10:22341868..22341892 (25 bp)
GCGGTATATTTTTGAGCCATTCCTA
LOC_Os10g42130
Os.21932.1.S1_at--539--1911Chr10:22341904..22341928 (25 bp)
ACGTGTCAGCCACTACAGACATATG
LOC_Os10g42130
Os.21932.1.S1_at--393--6311Chr10:22341981..22342005 (25 bp)
GATGAGCTTTCTTTTAGTTACTGGC
LOC_Os10g42130
Os.21932.1.S1_at--185--8351Chr10:22342003..22342027 (25 bp)
GGCTGTAATACATCTTCTCTGTAGC
LOC_Os10g42130
Os.21932.1.S1_at--93--7691Chr10:22342044..22342068 (25 bp)
GGGTTATGTATCCTCTTCAGTTAAT
LOC_Os10g42130
Os.21932.1.S1_at--96--6691Chr10:22342105..22342129 (25 bp)
GTTGCTGGTAGATCAATCTTCATCT
LOC_Os10g42130
Target Sequence 
GCTGTGCATGCCTCAGACTCAGGACCCGTTCTTCTCCGACGCCGGCTTCACGCAGGCAGCGCCTCCTCTCTACGGCGACG
TCATGGGAAGCGTGTCGGAGCACGAGCTCAAGTGGGACACCCTGGGCGGCTACTCCGGCGGCGGCGGTGGGGAGCTCTGG
AACGCGGCGGCGGCGCCGCTGCTGTGCAGGCAGGCCAGCGACGGCGACGACCTCACGGCGTGGTTCACGGCCGCCGACGA
CAACATGTCCGTCTTCTGAACGAGTCAACCATGACACGTGTGCTCCCGGGTTAGTTACACATGGCGGTATATTTTTGAGC
CATTCCTAACTGGGGCCCCACGTGTCAGCCACTACAGACATATGTCATCTATTATATATGCATAAATATGCCTNTAATCT
GTATGGATACAGAGGTGATGAGCTTTCTTTTAGTTACTGGCTGTAATACATCTTCTCTGTAGCATCATACAGCAGAGCTG
GGTTATGTATCCTCTTCAGTTAATGTACTTGTAACACTGATCTGTAAGCTAAAAGGTAGTGTTGCTGGTAGATCAATCTT
CATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21932.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis