Browse Element(s) Details


Os.12158.1.S1_at

Description gb:AK103375.1
DB_XREF= gi:32988584
TID=Os.12158.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12158 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative pyruvate kinase (OSJNBa0095C07.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033127B21, full insert sequence.
FL= gb:AK103375.1 gb:AK120979.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4210011/11Pyruvate kinase isozyme G, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42050OsAffx.22947.1.S1_x_at8/1110+22284658..22291017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42050OsAffx.22947.3.S1_x_at3/1110+22284658..22291017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42050OsAffx.22947.5.S1_x_at2/1110+22284658..22291017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42060Os.46801.2.S1_x_at11/1110+22298277..22299164Ribosome inactivating protein
LOC_Os10g42066OsAffx.7903.1.S1_at9/1110+22300114..22301588hypothetical protein
LOC_Os10g42072OsAffx.7903.2.S1_x_at3/1110+22302310..22303149hypothetical protein
LOC_Os10g42080OsAffx.7903.2.S1_at11/1110+22305295..22306113hypothetical protein
LOC_Os10g42080OsAffx.7903.2.S1_x_at11/1110+22305295..22306113hypothetical protein
LOC_Os10g42090Os.49269.1.A1_x_at11/1110+22306396..22310415nuclear protein E3-3, isoform a, putative, expressed
LOC_Os10g42090Os.12928.1.S1_x_at10/1110+22306396..22310415nuclear protein E3-3, isoform a, putative, expressed
LOC_Os10g42090Os.12928.1.S1_at8/1110+22306396..22310415nuclear protein E3-3, isoform a, putative, expressed
LOC_Os10g42100Os.12158.1.S2_at11/1110+22311234..22317103Pyruvate kinase isozyme G, chloroplast precursor, putative, expressed
LOC_Os10g42100Os.12158.1.S1_at11/1110+22311234..22317103Pyruvate kinase isozyme G, chloroplast precursor, putative, expressed
LOC_Os10g42110Os.46089.1.S1_at11/1110+22320335..22324577protein kinase family protein, putative, expressed
LOC_Os10g42130Os.21932.1.S1_at11/1110+22339832..22342131no apical meristem, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0004743molecular_functionpyruvate kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12158.1.S1_at--1075--11Chr10:22314669..22314693 (25 bp)
ATTGTGTTTACACGAACCGGCTCCA
LOC_Os10g42100
Os.12158.1.S1_at--316--8411Chr10:22314718..22314742 (25 bp)
GGCCCTCGTCTACAATTTTTGCATT
LOC_Os10g42100
Os.12158.1.S1_at--1142--1111Chr10:22314921..22314945 (25 bp)
AGTGAAGCAACGTCTGGCACTCTAC
LOC_Os10g42100
Os.12158.1.S1_at--1100--3311Chr10:22314938..22314962 (25 bp)
CACTCTACCAGGGTGTGGTTCCCAT
LOC_Os10g42100
Os.12158.1.S1_at--6--10071Chr10:22315011..22315152 (25 bp)
TAGTAGCTTGCTGAACGCCCAATTC
LOC_Os10g42100
Os.12158.1.S1_at--264--5711Chr10:22315165..22315189 (25 bp)
GACTACGTGACCCTTGTTCAGAGTG
LOC_Os10g42100
Os.12158.1.S1_at--358--7591Chr10:22315248..22315272 (25 bp)
GGGCTAATGAGCCTGACCGTCATAC
LOC_Os10g42100
Os.12158.1.S1_at--474--1771Chr10:22315263..22315287 (25 bp)
ACCGTCATACCGTCACAGGGATGTA
LOC_Os10g42100
Os.12158.1.S1_at--133--3131Chr10:22315418..22315442 (25 bp)
AATTTTCACATGGTTCCAATTGGAC
LOC_Os10g42100
Os.12158.1.S1_at--722--5471Chr10:22315444..22315468 (25 bp)
GAACATTTCGTCAGTTTTACTCTTA
LOC_Os10g42100
Os.12158.1.S1_at--147--9751Chr10:22315467..22315491 (25 bp)
TAATTACTCCCTTCCTCCTATAATA
LOC_Os10g42100
Target Sequence 
ATTGTGTTTACACGAACCGGCTCCATGGCAGTCCTTCTCAGCCACTACCGGCCCTCGTCTACAATTTTTGCATTTACAAA
TGAGGAACGAGTGAAGCAACGTCTGGCACTCTACCAGGGTGTGGTTCCCATTTACATGAAGTTTTCTGATGATGCAGAGG
AAACTTTCTCTAGAGCAATTAGTAGCTTGCTGAACGCCCAATTCGTGAAAGAAGGGGACTACGTGACCCTTGTTCAGAGT
GGAGTGAAGTCGATCTGGAGAGAGGAGTCTACTCACCACATTCAAGTGAGGAAAGTCCAGGGCTAATGAGCCTGACCGTC
ATACCGTCACAGGGATGTACCTGTTCAAATTTTGTTNGTTACTTGATGTGCTAAATTACGAGTAACTTTTACGGGGAACA
AGTTTGGATTATTATATGTTATGTTGATTTTACTTGTAGGCTCTGGAATTGAATAAGATAATCTATATTAATTTTCACAT
GGTTCCAATTGGACTGAACATTTCGTCAGTTTTACTCTTAATTACTCCCTTCCTCCTATAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12158.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis