Browse Element(s) Details


Os.49269.1.A1_x_at

Description gb:AK070664.1
DB_XREF= gi:32980688
TID=Os.49269.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49269 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023056O15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023056O15, full insert sequence.
FL= gb:AK070664.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4209011/11nuclear protein E3-3, isoform a, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42050OsAffx.22947.1.S1_x_at8/1110+22284658..22291017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42050OsAffx.22947.3.S1_x_at3/1110+22284658..22291017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42050OsAffx.22947.5.S1_x_at2/1110+22284658..22291017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42060Os.46801.2.S1_x_at11/1110+22298277..22299164Ribosome inactivating protein
LOC_Os10g42066OsAffx.7903.1.S1_at9/1110+22300114..22301588hypothetical protein
LOC_Os10g42072OsAffx.7903.2.S1_x_at3/1110+22302310..22303149hypothetical protein
LOC_Os10g42080OsAffx.7903.2.S1_at11/1110+22305295..22306113hypothetical protein
LOC_Os10g42080OsAffx.7903.2.S1_x_at11/1110+22305295..22306113hypothetical protein
LOC_Os10g42090Os.49269.1.A1_x_at11/1110+22306396..22310415nuclear protein E3-3, isoform a, putative, expressed
LOC_Os10g42090Os.12928.1.S1_x_at10/1110+22306396..22310415nuclear protein E3-3, isoform a, putative, expressed
LOC_Os10g42090Os.12928.1.S1_at8/1110+22306396..22310415nuclear protein E3-3, isoform a, putative, expressed
LOC_Os10g42100Os.12158.1.S2_at11/1110+22311234..22317103Pyruvate kinase isozyme G, chloroplast precursor, putative, expressed
LOC_Os10g42100Os.12158.1.S1_at11/1110+22311234..22317103Pyruvate kinase isozyme G, chloroplast precursor, putative, expressed
LOC_Os10g42110Os.46089.1.S1_at11/1110+22320335..22324577protein kinase family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49269.1.A1_x_at--1042--3051Chr10:22309817..22309841 (25 bp)
AATCAGTCCTGAGCTCCGCAAATTC
LOC_Os10g42090
Os.49269.1.A1_x_at--460--2672Chr10:22309867..22309891 (25 bp)
AAGCAGTTGATTCGGTAAAAGACCA
LOC_Os10g42090
Os.49269.1.A1_x_at--23--6812Chr10:22309923..22309947 (25 bp)
GTTTGTAAACTTCAATGTAGCAGAT
LOC_Os10g42090
Os.49269.1.A1_x_at--210--8512Chr10:22310012..22310036 (25 bp)
TGGCAGAGGAATGCGGCTTCAACAT
LOC_Os10g42090
Os.49269.1.A1_x_at--267--1172Chr10:22310092..22310116 (25 bp)
AGTCACTTCTTGAAACACGAGTGTT
LOC_Os10g42090
Os.49269.1.A1_x_at--562--2452Chr10:22310215..22310239 (25 bp)
AACAAGTGCCGTTGCCCTGTCCTTT
LOC_Os10g42090
Os.49269.1.A1_x_at--567--8052Chr10:22310272..22310296 (25 bp)
GGAGAGATCACACCTTTGGTTTTGT
LOC_Os10g42090
Os.49269.1.A1_x_at--233--10592Chr10:22310303..22310327 (25 bp)
TTCTCTTGTAATCGCGGGAGGACAA
LOC_Os10g42090
Os.49269.1.A1_x_at--983--7872Chr10:22310328..22310352 (25 bp)
GGTTTTTGACCTAGTAGTATACATC
LOC_Os10g42090
Os.49269.1.A1_x_at--1014--10791Chr10:22310379..22310403 (25 bp)
TTGTCTTCTATAACATCACACTCGG
LOC_Os10g42090
Os.49269.1.A1_x_at--482--2071Chr10:22310391..22310415 (25 bp)
ACATCACACTCGGTTTTTTACTACT
LOC_Os10g42090
Target Sequence 
AATCAGTCCTGAGCTCCGCAAATTCATTCNGTCAACTGGNATGAANCTGGAAGCAGTTGATTCGGTAAAAGACCAAATGN
TCCTTATTTACAACATCATCACTTNTGTTTGTAAACTTCAATGTAGCAGATATTTGTAGTTTNTTCNCTACCTNCAATGT
TTAGTCTTTTGCACATGTNTAATCCTTCNGTTGTATGGCAGAGGAATGCGGCTTCAACATNTAACATTCTGAATGAAGAG
GGGAGGCCAGTNGCGGCTGCACTTCTTCCTTGCGNAGTCACTTCTTGAAACACGAGTGTTANNTTTGTGGTGGTGAGCNT
CTTCTCNTTCCAGTCGATACTCGATAGAGNTGAAATGAAGCATANTTGTNGNATGGGAACACTGAAAATCTGTAACATNA
ACAAGTGCCGTTGCCCTGTCCTTTTCCTTTTCCCCACNCAAGNACCCAACCCCCTAGGAGAGATCACACCTTTGGTTTTG
TGGGTTNTTCTCTTGTAATCGCGGGAGGACAAGGTTTTTGACCTAGTAGTATACATCAGAATAANCGAGTCTGAAACAAG
TTGATTGTCTTCTATAACATCACACTCGGTTTTTTACTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49269.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis