Browse Element(s) Details


Os.46089.1.S1_at

Description gb:AK107462.1
DB_XREF= gi:32992671
TID=Os.46089.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46089 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative protein kinase (OSJNBa0095C07.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-A06, full insert sequence.
FL= gb:AK107462.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4211011/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42060Os.46801.2.S1_x_at11/1110+22298277..22299164Ribosome inactivating protein
LOC_Os10g42066OsAffx.7903.1.S1_at9/1110+22300114..22301588hypothetical protein
LOC_Os10g42072OsAffx.7903.2.S1_x_at3/1110+22302310..22303149hypothetical protein
LOC_Os10g42080OsAffx.7903.2.S1_at11/1110+22305295..22306113hypothetical protein
LOC_Os10g42080OsAffx.7903.2.S1_x_at11/1110+22305295..22306113hypothetical protein
LOC_Os10g42090Os.49269.1.A1_x_at11/1110+22306396..22310415nuclear protein E3-3, isoform a, putative, expressed
LOC_Os10g42090Os.12928.1.S1_x_at10/1110+22306396..22310415nuclear protein E3-3, isoform a, putative, expressed
LOC_Os10g42090Os.12928.1.S1_at8/1110+22306396..22310415nuclear protein E3-3, isoform a, putative, expressed
LOC_Os10g42100Os.12158.1.S2_at11/1110+22311234..22317103Pyruvate kinase isozyme G, chloroplast precursor, putative, expressed
LOC_Os10g42100Os.12158.1.S1_at11/1110+22311234..22317103Pyruvate kinase isozyme G, chloroplast precursor, putative, expressed
LOC_Os10g42110Os.46089.1.S1_at11/1110+22320335..22324577protein kinase family protein, putative, expressed
LOC_Os10g42130Os.21932.1.S1_at11/1110+22339832..22342131no apical meristem, putative, expressed
LOC_Os10g42150Os.9540.2.S1_at11/1110+22344952..22346899transposon protein, putative, unclassified, expressed
LOC_Os10g42160Os.48027.1.S1_at11/1110+22347537..22349469transposon protein, putative, unclassified, expressed
LOC_Os10g42160Os.48027.1.S1_x_at11/1110+22347537..22349469transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46089.1.S1_at--1152--6231Chr10:22323977..22324001 (25 bp)
GATGGAGCCACTTTTGAGGCCAAGA
LOC_Os10g42110
Os.46089.1.S1_at--373--3591Chr10:22324101..22324125 (25 bp)
CATTGGGACGACTGTTGCACTACTA
LOC_Os10g42110
Os.46089.1.S1_at--752--10351Chr10:22324150..22324174 (25 bp)
TTTATTGTGCAATCTCCGCCCAAAT
LOC_Os10g42110
Os.46089.1.S1_at--367--6211Chr10:22324222..22324246 (25 bp)
GAGGCATTGCTTATACTACGCTTTT
LOC_Os10g42110
Os.46089.1.S1_at--108--3731Chr10:22324237..22324261 (25 bp)
CTACGCTTTTGAGTCTGAGTTGCAC
LOC_Os10g42110
Os.46089.1.S1_at--52--1251Chr10:22324254..22324278 (25 bp)
AGTTGCACTTTGTTTCTCGGGTGAT
LOC_Os10g42110
Os.46089.1.S1_at--445--2411Chr10:22324285..22324309 (25 bp)
AAACACCTGCTGATCATTGCGTTGC
LOC_Os10g42110
Os.46089.1.S1_at--392--6671Chr10:22324305..22324329 (25 bp)
GTTGCAGTGCTCCTCTAGAGACGAG
LOC_Os10g42110
Os.46089.1.S1_at--27--10291Chr10:22324399..22324423 (25 bp)
TTTCCATTGGAATCTTTGGGCCCCA
LOC_Os10g42110
Os.46089.1.S1_at--953--4651Chr10:22324448..22324472 (25 bp)
GCGGGTTCCTTGTGATTAGCCTAGG
LOC_Os10g42110
Os.46089.1.S1_at--1076--6731Chr10:22324519..22324543 (25 bp)
GTTCTTGATGTGTTACTTGCTGCTT
LOC_Os10g42110
Target Sequence 
GATGGAGCCACTTTTGAGGCCAAGAAGCAAAATAGCTGGCGAGGTTAGGGGAACAAGTCATGGTTTCACCCCCAAATCTG
TTGTTGCCTTTTTAACAGAAAAAGGTAAGATGATGATGAGTGTTCATTGGGACGACTGTTGCACTACTAGGAGTGGGATT
GAAAATGCACTGTTTTATTGTGCAATCTCCGCCCAAATGTCGATAAATGAGTGGCGTTGTTGTGACCTGGAAGGCAAAAG
GCAGAGAGGCATTGCTTATACTACGCTTTTGAGTCTGAGTTGCACTTTGTTTCTCGGGTGATGNNAGCAAACACCTGCTG
ATCATTGCGTTGCAGTGCTCCTCTAGAGACGAGAGAATTGATGAGATGAGAAGATTGTAATTAAGGGGATGCTTTTCTGA
CAATTTCACCTTTTTTTTTCGTTTTCCATTGGAATCTTTGGGCCCCAGGTGAGGTGATAGTGTGAAGAAAGGCGGGTTCC
TTGTGATTAGCCTAGGATGGAGAATAAACTAGAGCCATCTAAATTCCATTCATTTCTACCATGTTCTTGATGTGTTACTT
GCTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46089.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis