Browse Element(s) Details


Os.12928.1.S1_x_at

Description gb:CA999969
DB_XREF= gi:27577275
DB_XREF=S234L_D08
TID=Os.12928.1
CNT=11
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.12928 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative nuclear protein (OSJNBa0095C07.4), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4209010/11nuclear protein E3-3, isoform a, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42050OsAffx.22947.1.S1_x_at8/1110+22284658..22291017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42050OsAffx.22947.3.S1_x_at3/1110+22284658..22291017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42050OsAffx.22947.5.S1_x_at2/1110+22284658..22291017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42060Os.46801.2.S1_x_at11/1110+22298277..22299164Ribosome inactivating protein
LOC_Os10g42066OsAffx.7903.1.S1_at9/1110+22300114..22301588hypothetical protein
LOC_Os10g42072OsAffx.7903.2.S1_x_at3/1110+22302310..22303149hypothetical protein
LOC_Os10g42080OsAffx.7903.2.S1_at11/1110+22305295..22306113hypothetical protein
LOC_Os10g42080OsAffx.7903.2.S1_x_at11/1110+22305295..22306113hypothetical protein
LOC_Os10g42090Os.49269.1.A1_x_at11/1110+22306396..22310415nuclear protein E3-3, isoform a, putative, expressed
LOC_Os10g42090Os.12928.1.S1_x_at10/1110+22306396..22310415nuclear protein E3-3, isoform a, putative, expressed
LOC_Os10g42090Os.12928.1.S1_at8/1110+22306396..22310415nuclear protein E3-3, isoform a, putative, expressed
LOC_Os10g42100Os.12158.1.S2_at11/1110+22311234..22317103Pyruvate kinase isozyme G, chloroplast precursor, putative, expressed
LOC_Os10g42100Os.12158.1.S1_at11/1110+22311234..22317103Pyruvate kinase isozyme G, chloroplast precursor, putative, expressed
LOC_Os10g42110Os.46089.1.S1_at11/1110+22320335..22324577protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12928.1.S1_x_at--512--2111Chr10:22308808..22308832 (25 bp)
ACATGGGCACCCAAATCATTTGCAG
LOC_Os10g42090
Os.12928.1.S1_x_at--729--431Chr10:22308957..22308981 (25 bp)
ATCTTCAAAGTAGTGCACCCTATCC
LOC_Os10g42090
Os.12928.1.S1_x_at--59--9031NONE
TGCACCCTATCCCAGAGATTCTGAT
NONE
Os.12928.1.S1_x_at--1135--5891Chr10:22309827..22309851 (25 bp)
GAGCTCCGCAAATTCATTCGGTCAA
LOC_Os10g42090
Os.12928.1.S1_x_at--956--3591Chr10:22309841..22309865 (25 bp)
CATTCGGTCAACTGGGATGAAGCTG
LOC_Os10g42090
Os.12928.1.S1_x_at--1133--3432Chr10:22309870..22310031 (25 bp)
CAGTTGATTCGAGGAATGCGGCTTC
LOC_Os10g42090
Os.12928.1.S1_x_at--720--10672Chr10:22310082..22310106 (25 bp)
TTCCTTGCGGAGTCACTTCTTGAAA
LOC_Os10g42090
Os.12928.1.S1_x_at--600--9971Chr10:22310116..22310140 (25 bp)
TACCTTTGTGGTGGTGAGCGTCTTC
LOC_Os10g42090
Os.12928.1.S1_x_at--862--10592Chr10:22310138..22310162 (25 bp)
TTCTCCTTCCAGTCGATACTCGATA
LOC_Os10g42090
Os.12928.1.S1_x_at--75--2512Chr10:22310209..22310233 (25 bp)
AACATTAACAAGTGCCGTTGCCCTG
LOC_Os10g42090
Os.12928.1.S1_x_at--566--8052Chr10:22310272..22310296 (25 bp)
GGAGAGATCACACCTTTGGTTTTGT
LOC_Os10g42090
Target Sequence 
ACATGGGCACCCAAATCATTTGCAGAGATAACAGCTGAAAGTTTATCAATCTTCAAAGTAGTGCACCCTATCCCAGAGAT
TCTGATTCTTGGTTGTGGTAGACACATCCAACCAATCAGTCCTGAGCTCCGCAAATTCATTCGGTCAACTGGGATGAAGC
TGGAAGCAGTTGATTCGAGGAATGCGGCTTCAACATATAACATTNTGAATGAAGAGGGGAGGCCAGTCGCGGCTGCACTT
CTTCCTTGCGGAGTCACTTCTTGAAACACGAGTGTTACCTTTGTGGTGGTGAGCGTCTTCTCCTTCCAGTCGATACTCGA
TAGAGTTGAAATGAAGCATATTGTCGCATNGGAACACTGAAAATCTGTAACATTAACAAGTGCCGTTGCCCTGTCCTTTT
CCTTTTCCCCACCCAAGAACCCAACCCCCTAGGAGAGATCACACCTTTGGTTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12928.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis