Browse Element(s) Details


Os.54322.1.S1_x_at

Description gb:AK103325.1
DB_XREF= gi:32988534
TID=Os.54322.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54322 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033125K21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033125K21, full insert sequence.
FL= gb:AK103325.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2685011/11hypothetical protein
LOC_Os02g0579010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26820OsAffx.30552.1.S1_at11/1110+13743429..13744611hypothetical protein
LOC_Os10g26830Os.46012.2.S1_x_at10/1110+13747435..13753138retrotransposon protein, putative, unclassified
LOC_Os10g26830Os.46012.3.S1_x_at6/1110+13747435..13753138retrotransposon protein, putative, unclassified
LOC_Os10g26830Os.27088.1.A1_x_at6/1110+13747435..13753138retrotransposon protein, putative, unclassified
LOC_Os10g26830Os.54691.1.S1_x_at1/1110+13747435..13753138retrotransposon protein, putative, unclassified
LOC_Os10g26840Os.20602.2.S1_x_at10/1110+13760724..13762904hAT family dimerisation domain containing protein
LOC_Os10g26850Os.54322.1.S1_x_at11/1110+13764235..13767131hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54322.1.S1_x_at--740--8312Chr10:13764440..13764464 (25 bp)
GGCTCAATCTCTTCGGTGGTCAGGA
LOC_Os10g26850
Os.54322.1.S1_x_at--453--7812Chr10:13764457..13764605 (25 bp)
GGTCAGGAGTTCTAGGTTGGCCCTC
LOC_Os10g26850
Os.54322.1.S1_x_at--14--7532Chr10:13764621..13764645 (25 bp)
GTGGCATGTGCCTTTCAAGATCTAT
LOC_Os10g26850
Os.54322.1.S1_x_at--868--1312Chr10:13764769..13764793 (25 bp)
AGATGGCGACCTCAACGGCAACGTG
LOC_Os10g26850
Os.54322.1.S1_x_at--137--2592Chr10:13764788..13764812 (25 bp)
AACGTGGATCCAGGCTAGAGCTTGA
LOC_Os10g26850
Os.54322.1.S1_x_at--773--3392Chr10:13764921..13764945 (25 bp)
CAGCGGCGGTTGACCATGGCATATG
LOC_Os10g26850
Os.54322.1.S1_x_at--51--852Chr10:13764936..13764960 (25 bp)
ATGGCATATGCTCCGGCAGGCAAAA
LOC_Os10g26850
Os.54322.1.S1_x_at--835--2332Chr10:13764958..13764982 (25 bp)
AAAGCAGAGAGATGGCCTTCCTCCC
LOC_Os10g26850
Os.54322.1.S1_x_at--671--10452Chr10:13765002..13765026 (25 bp)
TTAGATTAATCTTTCTCTCTCTCAG
LOC_Os10g26850
Os.54322.1.S1_x_at--836--9632Chr10:13765023..13765047 (25 bp)
TCAGGCTGCCATTGTTGTTCTTTTC
LOC_Os10g26850
Os.54322.1.S1_x_at--776--7652Chr10:13765064..13765088 (25 bp)
GGGATCGGCAATATTTCCTATTCTA
LOC_Os10g26850
Target Sequence 
GGCTCAATCTCTTCGGTGGTCAGGAGTTCTAGGTTGGCCCTCTCCGGTGCTAGACAGGTGGCATGTGCCTTTCAAGATCT
ATTGGGGACCTCTTCCTGCCGCTCCCATCATCCCTCGTTGCCCGCCCCACATCCCATCATCGACGGCGGCGTGGATTTTG
GTGGTCGCGCAGGTCTGGCTGACGAGCTCCATGGCGGCTCGAAGCAGATGGCGACCTCAACGGCAACGTGGATCCAGGCT
AGAGCTTGATAATGGCACTAATCTGCCAACGAGCTTGGCGGCAACATGCCCGGCGGCCGCCGTTAGTTCCTTACCCAGCG
CCGTCTCCACCGTCTTCGCTGCCTCCACGGTCATGGCCAGCGGCGGTTGACCATGGCATATGCTCCGGCAGGCAAAAGCA
GAGAGATGGCCTTCCTCCCCTTTCTCTCCCATCTCTCCTTAGATTAATCTTTCTCTCTCTCAGGCTGCCATTGTTGTTCT
TTTCATGGATAAAATTGTTAGGGATCGGCAATATTTCCTATTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54322.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis