Browse Element(s) Details


OsAffx.30552.1.S1_at

Description tigr:9638.m02293
TID=OsAffx.30552.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2682011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26820OsAffx.30552.1.S1_at11/1110+13743429..13744611hypothetical protein
LOC_Os10g26830Os.46012.2.S1_x_at10/1110+13747435..13753138retrotransposon protein, putative, unclassified
LOC_Os10g26830Os.46012.3.S1_x_at6/1110+13747435..13753138retrotransposon protein, putative, unclassified
LOC_Os10g26830Os.27088.1.A1_x_at6/1110+13747435..13753138retrotransposon protein, putative, unclassified
LOC_Os10g26830Os.54691.1.S1_x_at1/1110+13747435..13753138retrotransposon protein, putative, unclassified
LOC_Os10g26840Os.20602.2.S1_x_at10/1110+13760724..13762904hAT family dimerisation domain containing protein
LOC_Os10g26850Os.54322.1.S1_x_at11/1110+13764235..13767131hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30552.1.S1_at--871--9831Chr10:13744526..13744550 (25 bp)
TAAAGCCGTTGTTGCCAAGCTCGAC
LOC_Os10g26820
OsAffx.30552.1.S1_at--943--9711Chr10:13744487..13744511 (25 bp)
TCAACGTCAATGGTGCTTCGGCGGT
LOC_Os10g26820
OsAffx.30552.1.S1_at--1100--7811Chr10:13744465..13744489 (25 bp)
GGTCATCGTCGCTCGAGTAGATCTA
LOC_Os10g26820
OsAffx.30552.1.S1_at--841--1311Chr10:13744441..13744465 (25 bp)
AGAGGAGGCGACTACCGGTGACCTT
LOC_Os10g26820
OsAffx.30552.1.S1_at--901--6771Chr10:13743980..13744004 (25 bp)
GTTACTGCCATTTCCTGTTTCAAAA
LOC_Os10g26820
OsAffx.30552.1.S1_at--839--5571Chr10:13743613..13743634 (22 bp)
GAAAGGTTCATATAGCTGTGCTTCC
LOC_Os10g26820
OsAffx.30552.1.S1_at--774--8691Chr10:13743597..13743621 (25 bp)
TGTGCTTCCAGCTCTTGATCAAGGA
LOC_Os10g26820
OsAffx.30552.1.S1_at--998--10851Chr10:13743565..13743589 (25 bp)
TTGGATGTCCATGGCCTATTCGGAA
LOC_Os10g26820
OsAffx.30552.1.S1_at--97--5891Chr10:13743523..13743547 (25 bp)
GAGCGCTGGGATTATCTCGGAGCTA
LOC_Os10g26820
OsAffx.30552.1.S1_at--475--5871Chr10:13743497..13743521 (25 bp)
GAGCCTCCTACACATTCAGTGATTG
LOC_Os10g26820
OsAffx.30552.1.S1_at--1130--8511Chr10:13743474..13743498 (25 bp)
TGGAACTCAATTGCTCTTGCGGAAT
LOC_Os10g26820
Target Sequence 
TAAAGCCGTTGTTGCCAAGCTCGACGCCGGAGGAGGAAGTCAACGTCAATGGTGCTTCGGCGGTCATCGTCGCTCGAGTA
GATCTAGAGGAGGCGACTACCGGTGACCTTGGGGCAGAGTGCGAAAGAGGAGAAATCAGACTCAAACGGTGCAGAAGAAG
TCCGTTACTGCCATTTCCTGTTTCAAAAGTTTGGGTGGCTAGGATTGGGAAGCATCAGGAAATGAAGATTAACCACAGCT
TTGGAAAGGTTCATATAGCTGTGCTTCCAGCTCTTGATCAAGGAACAGACGTTGGATGTCCATGGCCTATTCGGAAAGCA
TTGCAGGAACCACGAGCGCTGGGATTATCTCGGAGCTACGAGCCTCCTACACATTCAGTGATTGGAACTCAATTGCTCTT
GCGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30552.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis