Browse Element(s) Details


Os.12925.1.S1_at

Description gb:AK101581.1
DB_XREF= gi:32986790
TID=Os.12925.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12925 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033050N22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033050N22, full insert sequence.
FL= gb:AK101581.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0577011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05720OsAffx.11907.1.S1_at11/112+2812235..2816191PPR986-12, putative, expressed
LOC_Os02g05730OsAffx.24115.1.S1_at6/112+2816878..2824086Protein kinase domain containing protein, expressed
LOC_Os02g05744OsAffx.11908.1.S1_at10/112+2824486..2830255Glycosyl hydrolase family 9 protein, expressed
LOC_Os02g05760OsAffx.31174.4.S1_x_at2/112+2833224..2836631hypothetical protein
LOC_Os02g05760OsAffx.31174.5.S1_x_at1/112+2833224..2836631hypothetical protein
LOC_Os02g05770Os.12925.1.S1_at11/112+2838177..2842546expressed protein
LOC_Os02g05780OsAffx.24117.1.S1_at10/112+2842900..2847426hypothetical protein
LOC_Os02g05780Os.46673.1.S1_x_at7/112+2842900..2847426hypothetical protein
LOC_Os02g05780Os.49252.1.S1_x_at1/112+2842900..2847426hypothetical protein
LOC_Os02g05790Os.54322.1.S1_x_at10/112+2858631..2861703hypothetical protein
LOC_Os02g05800OsAffx.11909.1.S1_at11/112+2863335..2864534hypothetical protein
LOC_Os02g05810Os.34785.1.S1_a_at11/112+2865052..2869029expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12925.1.S1_at--4--311Chr02:2841871..2841895 (25 bp)
ATAGCCATAGGGAATACGTGAGTAC
LOC_Os02g05770
Os.12925.1.S1_at--1092--5251Chr02:2841923..2841947 (25 bp)
GAATGTCCGCTCTCATTTTTACGTA
LOC_Os02g05770
Os.12925.1.S1_at--1020--4811Chr02:2841931..2841955 (25 bp)
GCTCTCATTTTTACGTACATCTGTG
LOC_Os02g05770
Os.12925.1.S1_at--439--9931Chr02:2841942..2841966 (25 bp)
TACGTACATCTGTGGATCTTTGCTT
LOC_Os02g05770
Os.12925.1.S1_at--322--491Chr02:2841949..2841973 (25 bp)
ATCTGTGGATCTTTGCTTATAGTCA
LOC_Os02g05770
Os.12925.1.S1_at--580--4891Chr02:2841991..2842015 (25 bp)
GCTTATATGGTGAGTTTCCAGAGCT
LOC_Os02g05770
Os.12925.1.S1_at--363--9471Chr02:2842016..2842040 (25 bp)
TCTGTTGGAGATTGAGATCCTGCTA
LOC_Os02g05770
Os.12925.1.S1_at--1088--8891Chr02:2842028..2842052 (25 bp)
TGAGATCCTGCTATGGAAAGCGAAT
LOC_Os02g05770
Os.12925.1.S1_at--1092--2351Chr02:2842044..2842068 (25 bp)
AAAGCGAATGAGATCGATGGGCTAG
LOC_Os02g05770
Os.12925.1.S1_at--34--791Chr02:2842060..2842084 (25 bp)
ATGGGCTAGGATTCGAGGATAAGTT
LOC_Os02g05770
Os.12925.1.S1_at--766--6811Chr02:2842082..2842106 (25 bp)
GTTTTAGTGGCTTTGAGATATGGCA
LOC_Os02g05770
Target Sequence 
ATAGCCATAGGGAATACGTGAGTACCGGGGATGATGACATGAGCTTTNAACTGGAATGTCCGCTCTCATTTTTACGTACA
TCTGTGGATCTTTGCTTATAGTCAATTNGGAGGTNAGAGGAATGCTTATATGGTGAGTTTCCAGAGCTTCTGTTGGAGAT
TGAGATCCTGCTATGGAAAGCGAATGAGATCGATGGGCTAGGATTCGAGGATAAGTTTTAGTGGCTTTGAGATATGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12925.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis