Browse Element(s) Details


OsAffx.11909.1.S1_at

Description tigr:9630.m00506
TID=OsAffx.11909.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0580011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05770Os.12925.1.S1_at11/112+2838177..2842546expressed protein
LOC_Os02g05780OsAffx.24117.1.S1_at10/112+2842900..2847426hypothetical protein
LOC_Os02g05780Os.46673.1.S1_x_at7/112+2842900..2847426hypothetical protein
LOC_Os02g05780Os.49252.1.S1_x_at1/112+2842900..2847426hypothetical protein
LOC_Os02g05790Os.54322.1.S1_x_at10/112+2858631..2861703hypothetical protein
LOC_Os02g05800OsAffx.11909.1.S1_at11/112+2863335..2864534hypothetical protein
LOC_Os02g05810Os.34785.1.S1_a_at11/112+2865052..2869029expressed protein
LOC_Os02g05820Os.52804.1.S1_at11/112+2869692..2874060Protein kinase domain containing protein, expressed
LOC_Os02g05830Os.37946.1.S1_at11/112+2874932..2876450Ribulose bisphosphate carboxylase, small subunit family protein, expressed
LOC_Os02g05840Os.10052.1.S1_at11/112+2876557..2882175expressed protein
LOC_Os02g05850NANA2+2887326..2892035transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11909.1.S1_at--711--10751Chr02:2863856..2863880 (25 bp)
TTGAAAGATGTCCACCACTACTTCC
LOC_Os02g05800
OsAffx.11909.1.S1_at--827--10691Chr02:2863809..2863833 (25 bp)
TTGCGGCGTGAACAACAAGCTCATT
LOC_Os02g05800
OsAffx.11909.1.S1_at--61--2871Chr02:2863772..2863796 (25 bp)
AAGTGCGATCTGCTCGAGTTCAGTC
LOC_Os02g05800
OsAffx.11909.1.S1_at--149--6751Chr02:2863755..2863779 (25 bp)
GTTCAGTCGCAGGACCTTTGATCAA
LOC_Os02g05800
OsAffx.11909.1.S1_at--859--8831Chr02:2863737..2863761 (25 bp)
TGATCAAATGGCCTATCGTACCCTT
LOC_Os02g05800
OsAffx.11909.1.S1_at--131--10751Chr02:2863714..2863738 (25 bp)
TTGACTCTTGGCTTCTCATGATCGA
LOC_Os02g05800
OsAffx.11909.1.S1_at--676--991Chr02:2863663..2863687 (25 bp)
AGGAGGCGTTCTGGCTTTTCAAGCA
LOC_Os02g05800
OsAffx.11909.1.S1_at--454--2351Chr02:2863605..2863629 (25 bp)
AAAGCACCTGATATCTCCAGTTGGA
LOC_Os02g05800
OsAffx.11909.1.S1_at--364--2631Chr02:2863502..2863526 (25 bp)
AACCTGCACGCATTCTTCGAGATCG
LOC_Os02g05800
OsAffx.11909.1.S1_at--37--6691Chr02:2863471..2863495 (25 bp)
GTTGCCGTACGATCGCTGAGCTCAA
LOC_Os02g05800
OsAffx.11909.1.S1_at--1118--4631Chr02:2863418..2863442 (25 bp)
GCGTTCAGTCACAACACTTTCATCA
LOC_Os02g05800
Target Sequence 
TTGAAAGATGTCCACCACTACTTCCTGTGCTCCGGCTTTCACAACGATTGCGGCGTGAACAACAAGCTCATTGAGATGTA
TCCCAAGTGCGATCTGCTCGAGTTCAGTCGCAGGACCTTTGATCAAATGGCCTATCGTACCCTTGACTCTTGGCTTCTCA
TGATCGAGGTCAGCTACAATGCGGAAGAGTTTGAGGAGGCGTTCTGGCTTTTCAAGCAGCTCAAAAGTAATTACCATGAT
CTGCACAAAACAAAGCACCTGATATCTCCAGTTGGATCGGTTGAACTGATACAACTATGCCGATCTGGCAAGGCAAGAAA
GGCTCTCAAACTGCTAGAGATGGGAGTGCACGCCAACCTGCACGCATTCTTCGAGATCGCAGCCGGTTGCCGTACGATCG
CTGAGCTCAACCTGGTGCGCGGATGCCTGCAACGCTCCGCGTTCAGTCACAACACTTTCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11909.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis