Browse Element(s) Details


OsAffx.24117.1.S1_at

Description tigr:9630.m00504
TID=OsAffx.24117.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0578010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05730OsAffx.24115.1.S1_at6/112+2816878..2824086Protein kinase domain containing protein, expressed
LOC_Os02g05744OsAffx.11908.1.S1_at10/112+2824486..2830255Glycosyl hydrolase family 9 protein, expressed
LOC_Os02g05760OsAffx.31174.4.S1_x_at2/112+2833224..2836631hypothetical protein
LOC_Os02g05760OsAffx.31174.5.S1_x_at1/112+2833224..2836631hypothetical protein
LOC_Os02g05770Os.12925.1.S1_at11/112+2838177..2842546expressed protein
LOC_Os02g05780OsAffx.24117.1.S1_at10/112+2842900..2847426hypothetical protein
LOC_Os02g05780Os.46673.1.S1_x_at7/112+2842900..2847426hypothetical protein
LOC_Os02g05780Os.49252.1.S1_x_at1/112+2842900..2847426hypothetical protein
LOC_Os02g05790Os.54322.1.S1_x_at10/112+2858631..2861703hypothetical protein
LOC_Os02g05800OsAffx.11909.1.S1_at11/112+2863335..2864534hypothetical protein
LOC_Os02g05810Os.34785.1.S1_a_at11/112+2865052..2869029expressed protein
LOC_Os02g05820Os.52804.1.S1_at11/112+2869692..2874060Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009082biological_processbranched chain family amino acid biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0004455molecular_functionketol-acid reductoisomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24117.1.S1_at--1127--9191Chr02:2842969..2842993 (25 bp)
TCTTCACCGACAGGTAACCAATCAA
LOC_Os02g05780
OsAffx.24117.1.S1_at--134--1031Chr02:2842980..2843004 (25 bp)
AGGTAACCAATCAATCTCCTGCTCT
LOC_Os02g05780
OsAffx.24117.1.S1_at--548--371Chr02:2842989..2843013 (25 bp)
ATCAATCTCCTGCTCTTCAGTTCTT
LOC_Os02g05780
OsAffx.24117.1.S1_at--609--10531Chr02:2843004..2843028 (25 bp)
TTCAGTTCTTGCTTTCTCCAACTCG
LOC_Os02g05780
OsAffx.24117.1.S1_at--1092--9071Chr02:2843013..2843037 (25 bp)
TGCTTTCTCCAACTCGAGGCTTGGA
LOC_Os02g05780
OsAffx.24117.1.S1_at--668--9371Chr02:2843026..2843050 (25 bp)
TCGAGGCTTGGAGCTCAGCTTTGGA
LOC_Os02g05780
OsAffx.24117.1.S1_at--523--7311NONE
GTGCTGCAGGAGTTCTGTTATTGGT
NONE
OsAffx.24117.1.S1_at--390--1232Chr09:16062145..16062169 (25 bp)
AGTTCTGTTATTGGTTGCCCTGTCG
NONE
OsAffx.24117.1.S1_at--638--9172Chr09:16062160..16062184 (25 bp)
TGCCCTGTCGATCTATTGAGTTCAC
NONE
OsAffx.24117.1.S1_at--597--53Chr09:16062174..16062261 (25 bp)
ATTGAGTTCACAAGGATCTTTGCTT
NONE
OsAffx.24117.1.S1_at--87--2231Chr02:2845807..2846288 (25 bp)
ACAAGGATCTTTGCTTGGGCTGTGG
LOC_Os02g05780
Target Sequence 
TCTTCACCGACAGGTAACCAATCAATCTCCTGCTCTTCAGTTCTTGCTTTCTCCAACTCGAGGCTTGGAGCTCAGCTTTG
GAGGTGTTCGGGTTGCACGCATGAGGTGGATCTGGACAAGCCGCCGGTGCTGCAGGAGTTCTGTTATTGGTTGCCCTGTC
GATCTATTGAGTTCACAAGGATCTTTGCTTGGGCTGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24117.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis