Browse Element(s) Details


Os.52804.1.S1_at

Description gb:AK069368.1
DB_XREF= gi:32979392
TID=Os.52804.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52804 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023014P05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023014P05, full insert sequence.
FL= gb:AK069368.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0582011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05780OsAffx.24117.1.S1_at10/112+2842900..2847426hypothetical protein
LOC_Os02g05780Os.46673.1.S1_x_at7/112+2842900..2847426hypothetical protein
LOC_Os02g05780Os.49252.1.S1_x_at1/112+2842900..2847426hypothetical protein
LOC_Os02g05790Os.54322.1.S1_x_at10/112+2858631..2861703hypothetical protein
LOC_Os02g05800OsAffx.11909.1.S1_at11/112+2863335..2864534hypothetical protein
LOC_Os02g05810Os.34785.1.S1_a_at11/112+2865052..2869029expressed protein
LOC_Os02g05820Os.52804.1.S1_at11/112+2869692..2874060Protein kinase domain containing protein, expressed
LOC_Os02g05830Os.37946.1.S1_at11/112+2874932..2876450Ribulose bisphosphate carboxylase, small subunit family protein, expressed
LOC_Os02g05840Os.10052.1.S1_at11/112+2876557..2882175expressed protein
LOC_Os02g05850NANA2+2887326..2892035transposon protein, putative, unclassified
LOC_Os02g05860NANA2+2893006..2895238retrotransposon protein, putative, unclassified
LOC_Os02g05870Os.47932.1.S1_at10/112+2898895..2903749expressed protein
LOC_Os02g05870Os.23622.1.A1_at1/112+2898895..2903749expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52804.1.S1_at--235--7831Chr02:2873324..2873348 (25 bp)
GGTCACCACGAAATCCGATGTTTAT
LOC_Os02g05820
Os.52804.1.S1_at--115--751Chr02:2873341..2873365 (25 bp)
ATGTTTATGCGCTCGGCATCATCTA
LOC_Os02g05820
Os.52804.1.S1_at--1133--4891Chr02:2873403..2873427 (25 bp)
GCTTACATGGTCTCTGATGCACTGG
LOC_Os02g05820
Os.52804.1.S1_at--613--7571Chr02:2873445..2873469 (25 bp)
GGGCTCTTGGATCCTAATGTCACCG
LOC_Os02g05820
Os.52804.1.S1_at--471--5331Chr02:2873492..2873516 (25 bp)
GAAGTTTGCTGAGCTTTCACTGAAA
LOC_Os02g05820
Os.52804.1.S1_at--896--5971Chr02:2873536..2873560 (25 bp)
GAGACCGTCCTGACTTGGAATCCGT
LOC_Os02g05820
Os.52804.1.S1_at--842--10511Chr02:2873584..2873608 (25 bp)
TTCACACATTCGTTGCATCATCTGG
LOC_Os02g05820
Os.52804.1.S1_at--567--6031Chr02:2873608..2873632 (25 bp)
GAGATAATTCTTCCATCGACCAAGG
LOC_Os02g05820
Os.52804.1.S1_at--377--3011Chr02:2873809..2873833 (25 bp)
AATGACTTGGCCGAGATTCTGAACG
LOC_Os02g05820
Os.52804.1.S1_at--825--9111Chr02:2873933..2873957 (25 bp)
TGCTGTAAATACTACCCTAGCCCAG
LOC_Os02g05820
Os.52804.1.S1_at--388--491Chr02:2874035..2874059 (25 bp)
ATCTGGTAGCACTGTTCACTTCTAT
LOC_Os02g05820
Target Sequence 
GGTCACCACGAAATCCGATGTTTATGCGCTCGGCATCATCTATCTTCAGATGATCACTGCAAAAGATGCAATGGGGCTTG
CTTACATGGTCTCTGATGCACTGGAGGAAGGAACATTTGAGGGGCTCTTGGATCCTAATGTCACCGGCTGGCCTGTGCAG
GAAGCTCAGAAGTTTGCTGAGCTTTCACTGAAATGCTGTGAACTCCGGCACAGAGACCGTCCTGACTTGGAATCCGTCGT
GCTCCCTGAGCTGATCCGTCTTCACACATTCGTTGCATCATCTGGAGATAATTCTTCCATCGACCAAGGCCACCAGCGTT
CAGTCAGCGACAAGGAGTTGGCTCTGGAAAATGACTTGGCCGAGATTCTGAACGATGGGCTAGTGAAGGGGGCGTCATTT
GCAGCATAAAAGTGCAAGGGGCCAGTAGATGTTATTCTGTCAAAGATACTGGAATCTGCAGTAGTTTTGATTTTGCTGTA
AATACTACCCTAGCCCAGAAATTTTTGAATAATTAGATCATTTGGGAAACGTGTACTAACAACAACCTGTAAATTGAACA
CAATCTATAGCTCTCATCTGGTAGCACTGTTCACTTCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52804.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis