Browse Element(s) Details


Os.34785.1.S1_a_at

Description gb:AK070155.1
DB_XREF= gi:32980179
TID=Os.34785.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34785 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023047M11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023047M11, full insert sequence.
FL= gb:AK070155.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0581011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05770Os.12925.1.S1_at11/112+2838177..2842546expressed protein
LOC_Os02g05780OsAffx.24117.1.S1_at10/112+2842900..2847426hypothetical protein
LOC_Os02g05780Os.46673.1.S1_x_at7/112+2842900..2847426hypothetical protein
LOC_Os02g05780Os.49252.1.S1_x_at1/112+2842900..2847426hypothetical protein
LOC_Os02g05790Os.54322.1.S1_x_at10/112+2858631..2861703hypothetical protein
LOC_Os02g05800OsAffx.11909.1.S1_at11/112+2863335..2864534hypothetical protein
LOC_Os02g05810Os.34785.1.S1_a_at11/112+2865052..2869029expressed protein
LOC_Os02g05820Os.52804.1.S1_at11/112+2869692..2874060Protein kinase domain containing protein, expressed
LOC_Os02g05830Os.37946.1.S1_at11/112+2874932..2876450Ribulose bisphosphate carboxylase, small subunit family protein, expressed
LOC_Os02g05840Os.10052.1.S1_at11/112+2876557..2882175expressed protein
LOC_Os02g05850NANA2+2887326..2892035transposon protein, putative, unclassified
LOC_Os02g05860NANA2+2893006..2895238retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34785.1.S1_a_at--194--5811Chr02:2868238..2868262 (25 bp)
GACCCTCCAGTACAGTAACTTGTTC
LOC_Os02g05810
Os.34785.1.S1_a_at--255--8191Chr02:2868270..2868294 (25 bp)
GGAAGGGAAGCTTCTTAGCCCAGTT
LOC_Os02g05810
Os.34785.1.S1_a_at--664--4551Chr02:2868287..2868311 (25 bp)
GCCCAGTTGGGCAATTTTTCTGAAG
LOC_Os02g05810
Os.34785.1.S1_a_at--1142--91Chr02:2868537..2868561 (25 bp)
ATTCGTCATCCTAACATGGTTCAGC
LOC_Os02g05810
Os.34785.1.S1_a_at--915--3411Chr02:2868575..2868599 (25 bp)
CAGACAAGACTCCAGTTCTTCCATC
LOC_Os02g05810
Os.34785.1.S1_a_at--790--10671Chr02:2868593..2868617 (25 bp)
TTCCATCCGTGACTCTTCAAGAGAC
LOC_Os02g05810
Os.34785.1.S1_a_at--486--5991Chr02:2868613..2868637 (25 bp)
GAGACCCAAGCTTCAAACTGCCATG
LOC_Os02g05810
Os.34785.1.S1_a_at--841--2551Chr02:2868628..2868652 (25 bp)
AACTGCCATGTGAATCGATCGGTCT
LOC_Os02g05810
Os.34785.1.S1_a_at--1102--7131Chr02:2868649..2868673 (25 bp)
GTCTGTCAACAAGCGGAGGCGTCCA
LOC_Os02g05810
Os.34785.1.S1_a_at--159--4251Chr02:2868678..2868702 (25 bp)
CCGTAGGATATGATTGTTGGCTGCA
LOC_Os02g05810
Os.34785.1.S1_a_at--758--9551Chr02:2868767..2868791 (25 bp)
TCTTCAGATTACTTCAAGCCGGTGA
LOC_Os02g05810
Target Sequence 
GACCCTCCAGTACAGTAACTTGTTCAGGTGATGGAAGGGAAGCTTCTTAGCCCAGTTGGGCAATTTTTCTGAAGTTAACA
TAGGTTGGTTATTGAACAACATTCGTCATCCTAACATGGTTCAGCAGCAACTCCACACCAGACAAGACTCCAGTTCTTCC
ATCCGTGACTCTTCAAGAGACCCAAGCTTCAAACTGCCATGTGAATCGATCGGTCTGTCAACAAGCGGAGGCGTCCATCA
ACCGTAGGATATGATTGTTGGCTGCAGCCAAAAATTACAAAAAAAAATTGATATGTTTGCACTGAACTGGAGATTAAGCA
GTTAATCTGTTCTTCAGATTACTTCAAGCCGGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34785.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis