Browse Element(s) Details


OsAffx.19177.2.S1_s_at

Description tigr:9639.m03203
TID=OsAffx.19177.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3543011/11hypothetical protein
LOC_Os11g3562011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35390Os.57062.1.S1_at11/1111+20233821..20236387Myb-like DNA-binding domain containing protein, expressed
LOC_Os11g35400Os.56290.1.S1_at11/1111+20242430..20247067AMP-binding enzyme family protein, expressed
LOC_Os11g35410OsAffx.7301.1.S1_at11/1111+20247547..20250627Leucine Rich Repeat family protein, expressed
LOC_Os11g35420Os.24530.1.S1_at11/1111+20253546..20256172expressed protein
LOC_Os11g35430OsAffx.19177.2.S1_s_at11/1111+20260615..20262515hypothetical protein
LOC_Os11g35430OsAffx.19177.1.S1_at11/1111+20260615..20262515hypothetical protein
LOC_Os11g35440OsAffx.7302.1.S1_at9/1111+20263736..20265310hypothetical protein
LOC_Os11g35450Os.49950.1.S1_at11/1111+20268771..20271968Leucine Rich Repeat family protein, expressed
LOC_Os11g35460Os.47463.1.S1_x_at6/1111+20284608..20285602transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35460Os.14491.2.S1_x_at5/1111+20284608..20285602transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35470NANA11+20285787..20288305transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19177.2.S1_s_at--754--2532Chr11:20384701..20384725 (25 bp)
AACTACATCTTCAATCGCCCGAGGG
LOC_Os11g35620
OsAffx.19177.2.S1_s_at--791--7932Chr11:20385815..20385839 (25 bp)
GGATAAGGTGTTGAGTGCCAGATAC
LOC_Os11g35620
OsAffx.19177.2.S1_s_at--710--6652Chr11:20385824..20385848 (25 bp)
GTTGAGTGCCAGATACATTGTGTAT
LOC_Os11g35620
OsAffx.19177.2.S1_s_at--657--2932Chr11:20385891..20385915 (25 bp)
AAGGCAAGGCCAGGCAAGCGTTGCT
LOC_Os11g35620
OsAffx.19177.2.S1_s_at--694--2952Chr11:20385896..20385920 (25 bp)
AAGGCCAGGCAAGCGTTGCTCGGTA
LOC_Os11g35620
OsAffx.19177.2.S1_s_at--728--2672Chr11:20385906..20385930 (25 bp)
AAGCGTTGCTCGGTAGAGGTCACCT
LOC_Os11g35620
OsAffx.19177.2.S1_s_at--1146--1632Chr11:20385907..20385931 (25 bp)
AGCGTTGCTCGGTAGAGGTCACCTT
LOC_Os11g35620
OsAffx.19177.2.S1_s_at--310--4492Chr11:20386229..20386253 (25 bp)
GCCGAGTTCGCTGCTCAAAGATTTG
LOC_Os11g35620
OsAffx.19177.2.S1_s_at--172--6072Chr11:20386232..20386256 (25 bp)
GAGTTCGCTGCTCAAAGATTTGAAA
LOC_Os11g35620
OsAffx.19177.2.S1_s_at--714--4752Chr11:20386238..20386262 (25 bp)
GCTGCTCAAAGATTTGAAAGTTCTT
LOC_Os11g35620
OsAffx.19177.2.S1_s_at--22--6752Chr11:20386257..20386281 (25 bp)
GTTCTTGTAGAACACTTGATCTTGG
LOC_Os11g35620
Target Sequence 
AACTACATCTTCAATCGCCCGAGGGGCGACGCCCAGACACTCACCACGGAGGACCCATCTTTCATCTTGACAGGGCCTAT
CCGTGCAATCAACTGCTCTCAGCGTATCGAATTCGAAATCGATCTCAAGGTTAGGGGGAAAACACAATCCGATAAGGATA
AGGTGTTGAGTGCCAGATACATTGTGTATGAAACTATGGGGCCAAATAGTATAGTTGGGCAGGTTAGATCAAAGGCAAGG
CCAGGCAAGCGTTGCTCGGTAGAGGTCACCTTTGCCCATCTCGCGGGGCGGTGGAGGCGGCGATCGAGTAAAGATGGTTC
TGTACTAGCTGTTGCTGATGATGGTGTGATCAAGCTTGCTCGGAGTGTCGCCGTCGTCGAAAGTACAGGGGTGCTGAACC
TTCATGCGATCATCACTCGAAATGATGGTAGTAGTAGTGGGGATGATGGGGTTGGTGTTGCTGCTGAAGATCATGCCGAG
TTCGCTGCTCAAAGATTTGAAAGTTCTTGTAGAACACTTGATCTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19177.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis