Browse Element(s) Details

OsAffx.7303.1.S1_at

Description

tigr:9639.m03191
TID=OsAffx.7303.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=135818 AWJL218 protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os11g35490	11/11	Leucine Rich Repeat family protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os11g35450	Os.49950.1.S1_at	11/11	11	+	20268771..20271968	Leucine Rich Repeat family protein, expressed
LOC_Os11g35460	Os.47463.1.S1_x_at	6/11	11	+	20284608..20285602	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35460	Os.14491.2.S1_x_at	5/11	11	+	20284608..20285602	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35470	NA	NA	11	+	20285787..20288305	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35480	NA	NA	11	+	20291063..20294368	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35490	OsAffx.7303.1.S1_at	11/11	11	+	20295383..20298148	Leucine Rich Repeat family protein
LOC_Os11g35500	OsAffx.31320.2.S1_at	11/11	11	+	20301687..20304971	Leucine Rich Repeat family protein
LOC_Os11g35510	Os.26999.1.A1_at	1/11	11	+	20307686..20310846	retrotransposon protein, putative, LINE subclass
LOC_Os11g35520	OsAffx.22421.1.S1_at	4/11	11	+	20320991..20325023	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35520	OsAffx.22421.4.S1_x_at	3/11	11	+	20320991..20325023	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35520	Os.26886.3.S1_x_at	2/11	11	+	20320991..20325023	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35520	OsAffx.22421.2.S1_at	2/11	11	+	20320991..20325023	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35520	OsAffx.16244.1.S1_x_at	1/11	11	+	20320991..20325023	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35520	OsAffx.22421.3.S1_at	1/11	11	+	20320991..20325023	transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006468	biological_process	protein amino acid phosphorylation
GO:0006952	biological_process	defense response
GO:0007165	biological_process	signal transduction
GO:0007169	biological_process	transmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674	molecular_function	protein serine/threonine kinase activity
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding
GO:0016301	molecular_function	kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.7303.1.S1_at--1141--749	1	Chr11:20297561..20297585 (25 bp)	GTGGTCACCATTGACTTGTCTTCAA	LOC_Os11g35490
OsAffx.7303.1.S1_at--783--45	1	Chr11:20297586..20297610 (25 bp)	ATCTCTTGATCGGTGCAATTCCTGA	LOC_Os11g35490
OsAffx.7303.1.S1_at--788--569	1	Chr11:20297612..20297636 (25 bp)	GACTTAGTTTCTCTTGTCGGATTAA	LOC_Os11g35490
OsAffx.7303.1.S1_at--710--661	1	Chr11:20297686..20297710 (25 bp)	GATTGGCGACATGCAGTCACTGGAA	LOC_Os11g35490
OsAffx.7303.1.S1_at--610--821	1	Chr11:20297707..20297731 (25 bp)	GGAATCGCTCGACATCTCAAAGAAT	LOC_Os11g35490
OsAffx.7303.1.S1_at--288--737	1	Chr11:20297742..20297766 (25 bp)	GTGAAATCCCAGTAGGCCTATCCAA	LOC_Os11g35490
OsAffx.7303.1.S1_at--50--119	1	Chr11:20297818..20297842 (25 bp)	AGTACCATCAGGGTCACAGCTTGAC	LOC_Os11g35490
OsAffx.7303.1.S1_at--377--447	1	Chr11:20297890..20297914 (25 bp)	GCCTCCTCTCGAAAATAGCTGTTCA	LOC_Os11g35490
OsAffx.7303.1.S1_at--363--113	1	Chr11:20297921..20297945 (25 bp)	AGTGCCTCAAAGCAACGCCATCTGA	LOC_Os11g35490
OsAffx.7303.1.S1_at--398--755	1	Chr11:20297972..20297996 (25 bp)	GGGCCATTCTCCCTTGGAGTTGTAC	LOC_Os11g35490
OsAffx.7303.1.S1_at--414--681	1	Chr11:20298023..20298047 (25 bp)	GTTTTCTGTACCCTTCTGTTCAAGA	LOC_Os11g35490

Target Sequence

GTGGTCACCATTGACTTGTCTTCAAATCTCTTGATCGGTGCAATTCCTGAAGACTTAGTTTCTCTTGTCGGATTAATAAA
TCTGAATCTATCAAGGAACTACTTGAGTGGAAAAATTCCATATAGGATTGGCGACATGCAGTCACTGGAATCGCTCGACA
TCTCAAAGAATAAGCTTTACGGTGAAATCCCAGTAGGCCTATCCAATTTAACATATTTAAGTTATCTGAACCTATCTTAT
AACAATCTTACTGGAAGAGTACCATCAGGGTCACAGCTTGACACCCTCAATGACCAGCATCCATATGATGGCAATGATGG
TCTCTGTGGGCCTCCTCTCGAAAATAGCTGTTCAAGCAGCAGTGCCTCAAAGCAACGCCATCTGATAAGAAGCAAGCAAA
GTTTGGGCATGGGGCCATTCTCCCTTGGAGTTGTACTGGGATTCATAGCAGGTCTCTGGGTGGTTTTCTGTACCCTTCTG
TTCAAGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis