Browse Element(s) Details


OsAffx.31312.1.S1_at

Description tigr:9639.m03206
TID=OsAffx.31312.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 135817 AWJL175 protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3564011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35590OsAffx.8479.1.S1_at10/1111+20365529..20373199retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g35590OsAffx.24279.1.S1_at2/1111+20365529..20373199retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g35590Os.7582.1.S1_at1/1111+20365529..20373199retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g35600NANA11+20375779..20376288hypothetical protein
LOC_Os11g35610NANA11+20383209..20383569hypothetical protein
LOC_Os11g35620OsAffx.19177.2.S1_s_at11/1111+20383829..20386333expressed protein
LOC_Os11g35620OsAffx.19177.2.S1_at11/1111+20383829..20386333expressed protein
LOC_Os11g35620OsAffx.19177.1.S1_at2/1111+20383829..20386333expressed protein
LOC_Os11g35630Os.53737.1.S1_at1/1111+20386808..20390725retrotransposon protein, putative, unclassified
LOC_Os11g35640OsAffx.31312.1.S1_at11/1111+20392603..20394533Leucine Rich Repeat family protein
LOC_Os11g35650Os.46053.2.S1_x_at10/1111+20396822..20400054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35660Os.49950.1.S1_at4/1111+20400945..20404226Leucine Rich Repeat family protein
LOC_Os11g35670OsAffx.7305.1.S1_at11/1111+20407273..20407533hypothetical protein
LOC_Os11g35680Os.45173.1.S1_x_at3/1111+20411407..20418845retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g35680Os.17297.1.S1_at1/1111+20411407..20418845retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009887biological_processorgan morphogenesis
GO:0009965biological_processleaf morphogenesis
GO:0016049biological_processcell growth
GO:0030155biological_processregulation of cell adhesion
GO:0042831biological_processdefense response to pathogenic fungi
GO:0051301biological_processcell division
GO:0005739cellular_componentmitochondrion
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31312.1.S1_at--276--2091Chr11:20392895..20392919 (25 bp)
ACATAGGTCCTTTGTTTCCTTCATG
LOC_Os11g35640
OsAffx.31312.1.S1_at--157--9791Chr11:20392923..20392947 (25 bp)
TAAGTGGCCGATGGGCATTTCACAC
LOC_Os11g35640
OsAffx.31312.1.S1_at--977--3291Chr11:20392945..20393064 (25 bp)
CACATTAATATTTCACGCGCCAACA
LOC_Os11g35640
OsAffx.31312.1.S1_at--192--3971Chr11:20393605..20393629 (25 bp)
CGGTGTTATACCTTGGCAGCTATCA
LOC_Os11g35640
OsAffx.31312.1.S1_at--870--5311Chr11:20393653..20393677 (25 bp)
GAAGTCTATGCTACGTAAGCTCCCA
LOC_Os11g35640
OsAffx.31312.1.S1_at--920--6151Chr11:20393692..20393716 (25 bp)
GGGAGTTGACCGTTATCTTTCGAGG
LOC_Os11g35640
OsAffx.31312.1.S1_at--991--7811Chr11:20394066..20394090 (25 bp)
GGTCAACTTGACACACTCTACAACA
LOC_Os11g35640
OsAffx.31312.1.S1_at--293--7152Chr11:20394098..20394122 (25 bp)
GTCTATGTACGATGGCAACGCCGGT
LOC_Os11g35640
OsAffx.31312.1.S1_at--884--2271Chr11:20394147..20394171 (25 bp)
AAATGCCCTGGGAACGACGCATCAA
LOC_Os11g35640
OsAffx.31312.1.S1_at--74--6912Chr11:20394209..20394233 (25 bp)
GTATCTCTGCTTTGGACTTGTCATA
LOC_Os11g35640
OsAffx.31312.1.S1_at--974--7411Chr11:20394258..20394282 (25 bp)
GTGTTTTCGACCCTTCTATTCAAGA
LOC_Os11g35640
Target Sequence 
ACATAGGTCCTTTGTTTCCTTCATGGTTTAAGTGGCCGATGGGCATTTCACACATTAATATTTCACGCGCCAACAGCCTA
TCCGGTGTTATACCTTGGCAGCTATCAAATCTTGAAGCTATGACAAAAAGGAAGTCTATGCTACGTAAGCTCCCAAACAA
TTATTCACGGGGAGTTGACCGTTATCTTTCGAGGTTCAAACATATGGTTGGTGAACTATCAGTCACTACCAAGAGGCAAG
ATCTTAAATATCAAGGCTTTGCACTTTTGGGAATAGTGACTATTGACTTATCATCCAACTACTTGACTGGAAGAATACCA
TCAGGAGGTCAACTTGACACACTCTACAACAATAATCCGTCTATGTACGATGGCAACGCCGGTCTCTGTGGGGATATTCT
TAAGAAGAAATGCCCTGGGAACGACGCATCAAATGACTACGGGAGTTACAAAGACCACTATGAGTTATTGTATCTCTGCT
TTGGACTTGTCATAGGATTTGTACTTGGCCTCTGGGTGGTGTTTTCGACCCTTCTATTCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31312.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis