Browse Element(s) Details


Os.46053.2.S1_x_at

Description gb:NM_195271.1
DB_XREF= gi:37531901
TID=Os.46053.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46053 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0079H13.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0079H13.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1122011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g4566010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g3565010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g1411010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g3227010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g0328010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g160909/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g327309/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g260109/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g097208/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g267486/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g185605/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g140305/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g200904/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g11180Os.32672.1.S1_x_at1/1110+5960127..5963265hypothetical protein
LOC_Os10g11180OsAffx.2494.1.S1_at1/1110+5960127..5963265hypothetical protein
LOC_Os10g11180OsAffx.12184.1.S1_x_at1/1110+5960127..5963265hypothetical protein
LOC_Os10g11190OsAffx.22699.1.S1_x_at1/1110+5964097..5970694retrotransposon protein, putative, unclassified
LOC_Os10g11190OsAffx.18275.1.S1_x_at1/1110+5964097..5970694retrotransposon protein, putative, unclassified
LOC_Os10g11200Os.32642.1.S1_at11/1110+5974227..5979386aminotransferase, classes I and II family protein, expressed
LOC_Os10g11200Os.54125.1.S1_at1/1110+5974227..5979386aminotransferase, classes I and II family protein, expressed
LOC_Os10g11210NANA10+5983580..5986912transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11220Os.46053.2.S1_x_at11/1110+5988115..5991347transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11230Os.47463.1.S1_x_at5/1110+5993282..5996982transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11230Os.14491.2.S1_x_at4/1110+5993282..5996982transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11240OsAffx.20647.1.S1_at11/1110+5998784..6001847hypothetical protein
LOC_Os10g11250OsAffx.8398.1.S1_at11/1110+6002618..6007189transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11260Os.14656.2.S1_at11/1110+6009693..6015999Ubiquitin-conjugating enzyme E2 M, putative, expressed
LOC_Os10g11260Os.14656.2.S1_x_at11/1110+6009693..6015999Ubiquitin-conjugating enzyme E2 M, putative, expressed
LOC_Os10g11260Os.14656.1.S1_at11/1110+6009693..6015999Ubiquitin-conjugating enzyme E2 M, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46053.2.S1_x_at--40--711Chr10:5988654..5988678 (25 bp)
ATGAGATTTTCTTTCGTGCTTGCTG
LOC_Os10g11220
Os.46053.2.S1_x_at--118--84315Chr12:19743793..19743817 (25 bp)
GGCCTGGTTCGGTTCATGACATGAG
LOC_Os12g32730
Os.46053.2.S1_x_at--761--100514Chr12:19743845..19743869 (25 bp)
TAGTGCCAAGTTTCCAAAGCCACCT
LOC_Os12g32730
Os.46053.2.S1_x_at--146--33712Chr11:5183020..5183044 (25 bp)
CACCTCCAGGAAAGTTTTATCTCGT
LOC_Os11g09720
Os.46053.2.S1_x_at--413--101515Chr12:19743882..19743906 (25 bp)
TATCTCGTAGACTCGGGATACCCAA
LOC_Os12g32730
Os.46053.2.S1_x_at--254--2713Chr12:19743907..19743931 (25 bp)
ATAGGCCGGGTTATCTAGCACCATA
LOC_Os12g32730
Os.46053.2.S1_x_at--1117--1314Chr12:19744003..19744027 (25 bp)
ATTACTGCCATTCTTCGTGTCGGAA
LOC_Os12g32730
Os.46053.2.S1_x_at--29--12113Chr12:19744080..19744104 (25 bp)
AGTTTACCAAGCTACTCGCAGGAAA
LOC_Os12g32730
Os.46053.2.S1_x_at--218--86715Chr12:19744208..19744232 (25 bp)
TGATCCATTGGGTGGAACCTCTTCT
LOC_Os12g32730
Os.46053.2.S1_x_at--267--95715Chr12:19744227..19744251 (25 bp)
TCTTCTCCATCTAGCGAACCAACAA
LOC_Os12g32730
Os.46053.2.S1_x_at--636--57115Chr12:19744260..19744284 (25 bp)
GACTCGCGTGTCATGAACCAATTTC
LOC_Os12g32730
Target Sequence 
ATGAGATTTTCTTTCGTGCTTGCTGGGTGGCCTGGTTCGGTTCATGACATGAGGGTATTCAATGATGCACATACTAGATT
TAGTGCCAAGTTTCCAAAGCCACCTCCAGGAAAGTTTTATCTCGTAGACTCGGGATACCCAAATAGGCCGGGTTATCTAG
CACCATACAAGGGTATAACATATCATTTCCAAGAGTACAACGAAAGCACATTGCCAAGGGGAAAAAGGGAGCACTTTAAT
TACTGCCATTCTTCGTGTCGGAATGTCATTGAGAGGTCATTTGGGGTCTTGAAGAACAAGTGGAGGATTTTGTTTAGTTT
ACCAAGCTACTCGCAGGAAAAGCAAAGCAGAATTATCCATGCATGCATAGCACTTCATAATTTCATTAGAGACAGTCAAA
TGGCTGATACAGAGTTCGACAATTGTGACCATGATGAAAATTATGATCCATTGGGTGGAACCTCTTCTCCATCTAGCGAA
CCAACAAACGAATTGGACTCGCGTGTCATGAACCAATTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46053.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis