Browse Element(s) Details


Os.54125.1.S1_at

Description gb:AK102060.1
DB_XREF= gi:32987269
TID=Os.54125.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54125 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033082D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033082D09, full insert sequence.
FL= gb:AK102060.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3862011/11NADPH-cytochrome P450 reductase, putative, expressed
LOC_Os10g112001/11aminotransferase, classes I and II family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38570Os.7942.1.S1_at10/119+22187611..22191213expressed protein
LOC_Os09g38580Os.7737.1.S1_at11/119+22192244..22196704Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os09g38590NANA9+22199384..22200076hypothetical protein
LOC_Os09g38600Os.52115.1.S1_at10/119+22201597..22203686expressed protein
LOC_Os09g38610NANA9+22207524..22208021hypothetical protein
LOC_Os09g38620Os.54125.1.S1_at11/119+22212010..22217764NADPH-cytochrome P450 reductase, putative, expressed
LOC_Os09g38630OsAffx.30191.1.S1_at11/119+22219929..22221506IBR domain containing protein
LOC_Os09g38640OsAffx.6519.1.S1_at11/119+22222559..22224335IBR domain containing protein, expressed
LOC_Os09g38640OsAffx.2477.1.S1_x_at1/119+22222559..22224335IBR domain containing protein, expressed
LOC_Os09g38650Os.56200.1.S1_at11/119+22224746..22226350expressed protein
LOC_Os09g38660Os.51230.1.S1_at11/119+22229812..22232304expressed protein
LOC_Os09g38670OsAffx.30192.1.S1_at11/119+22234565..22235488Thioredoxin family protein, expressed
LOC_Os09g38670OsAffx.30192.1.S1_s_at11/119+22234565..22235488Thioredoxin family protein, expressed
LOC_Os09g38670Os.47888.1.S1_at11/119+22234565..22235488Thioredoxin family protein, expressed
LOC_Os09g38680OsAffx.18048.1.S1_at11/119+22237146..22237945hypothetical protein
LOC_Os09g38690Os.11336.1.S1_at11/119+22238962..22243005major facilitator superfamily protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009698biological_processphenylpropanoid metabolism
GO:0030148biological_processsphingolipid biosynthesis
GO:0046512biological_processsphingosine biosynthesis
GO:0005783cellular_componentendoplasmic reticulum
GO:0009507cellular_componentchloroplast
GO:0016020cellular_componentmembrane
GO:0003958molecular_functionNADPH-hemoprotein reductase activity
GO:0004758molecular_functionserine C-palmitoyltransferase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54125.1.S1_at--677--2231Chr09:22212896..22212920 (25 bp)
ACAATTTTGTTGAGACCGGTGCGCT
LOC_Os09g38620
Os.54125.1.S1_at--29--1791Chr09:22212882..22212906 (25 bp)
ACCGGTGCGCTGTCTGAATTGATTG
LOC_Os09g38620
Os.54125.1.S1_at--592--51Chr09:22212865..22212889 (25 bp)
ATTGATTGTAGCCTTTTCTCGTGAG
LOC_Os09g38620
Os.54125.1.S1_at--665--10271Chr09:22212851..22212875 (25 bp)
TTTCTCGTGAGGGTCCTTCAAAGGA
LOC_Os09g38620
Os.54125.1.S1_at--879--2951Chr09:22212729..22212835 (25 bp)
AATGGCAGAGAAGGCTCCCGAGATT
LOC_Os09g38620
Os.54125.1.S1_at--239--9311Chr09:22212714..22212738 (25 bp)
TCCCGAGATTTGGAGCATCATTTCT
LOC_Os09g38620
Os.54125.1.S1_at--801--1531Chr09:22212701..22212725 (25 bp)
AGCATCATTTCTCAGGGTGGTTATA
LOC_Os09g38620
Os.54125.1.S1_at--501--8231Chr09:22212648..22212672 (25 bp)
GGCAAGAGATGTACACCGCACACTA
LOC_Os09g38620
Os.54125.1.S1_at--977--1731Chr09:22212344..22212644 (25 bp)
ACCATTGTGCAGGAACAGGGTTCTT
LOC_Os09g38620
Os.54125.1.S1_at--995--7751Chr09:22212250..22212274 (25 bp)
GGTGACAAGCCATCCTCGCAAATCC
LOC_Os09g38620
Os.54125.1.S1_at--446--1812Chr10:5976508..5976532 (23 bp)
ACCCTTGTGTCTCTGCCAAAATGTA
LOC_Os10g11200
Target Sequence 
ACAATTTTGTTGAGACCGGTGCGCTGTCTGAATTGATTGTAGCCTTTTCTCGTGAGGGTCCTTCAAAGGAGTATGTTCAG
CACAAAATGGCAGAGAAGGCTCCCGAGATTTGGAGCATCATTTCTCAGGGTGGTTATATTTATGTCTGTGGTGATGCAAA
GGGCATGGCAAGAGATGTACACCGCACACTACACACCATTGTGCAGGAACAGGGTTCTTTGGACAACTCAAACACAGAAA
GCTATGTAAAGAGCTTGCAGATGGAAGGGAGATACTTGAGAGATGTCTGGTGACAAGCCATCCTCGCAAATCCACCCTTG
TGTCTCTGCCAAAATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54125.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis