Browse Element(s) Details


Os.52115.1.S1_at

Description gb:AK064751.1
DB_XREF= gi:32974769
TID=Os.52115.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52115 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-F08, full insert sequence.
FL= gb:AK064751.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3860010/11expressed protein
LOC_Os09g384901/11hypothetical protein
LOC_Os07g447601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38550Os.46329.1.S1_at11/119+22173255..22177767Protein phosphatase 2C containing protein, expressed
LOC_Os09g38560Os.3767.1.S1_at7/119+22181283..22182377low temperature and salt responsive protein, putative, expressed
LOC_Os09g38570Os.7942.1.S1_at10/119+22187611..22191213expressed protein
LOC_Os09g38580Os.7737.1.S1_at11/119+22192244..22196704Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os09g38590NANA9+22199384..22200076hypothetical protein
LOC_Os09g38600Os.52115.1.S1_at10/119+22201597..22203686expressed protein
LOC_Os09g38610NANA9+22207524..22208021hypothetical protein
LOC_Os09g38620Os.54125.1.S1_at11/119+22212010..22217764NADPH-cytochrome P450 reductase, putative, expressed
LOC_Os09g38630OsAffx.30191.1.S1_at11/119+22219929..22221506IBR domain containing protein
LOC_Os09g38640OsAffx.6519.1.S1_at11/119+22222559..22224335IBR domain containing protein, expressed
LOC_Os09g38640OsAffx.2477.1.S1_x_at1/119+22222559..22224335IBR domain containing protein, expressed
LOC_Os09g38650Os.56200.1.S1_at11/119+22224746..22226350expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52115.1.S1_at--688--5733Chr09:22202461..22202485 (25 bp)
GACTGGGATCTGTCCACATGGAGCA
LOC_Os09g38600
Os.52115.1.S1_at--1088--11Chr09:22202513..22202537 (25 bp)
ATTGGCGCGAGGACTCTCTGGTCGA
LOC_Os09g38600
Os.52115.1.S1_at--255--6231Chr09:22202536..22202560 (25 bp)
GAGGCCTCTGACATCTTAATCGACC
LOC_Os09g38600
Os.52115.1.S1_at--349--10491Chr09:22202551..22202575 (25 bp)
TTAATCGACCACAACATCTGCAACG
LOC_Os09g38600
Os.52115.1.S1_at--783--9011Chr09:22202569..22202593 (25 bp)
TGCAACGTTGAGCTCTTGCCTAAGA
LOC_Os09g38600
Os.52115.1.S1_at--401--2311Chr09:22202700..22202724 (25 bp)
AAAGGCTGTGCTGCTGTCTATTGAC
LOC_Os09g38600
Os.52115.1.S1_at--1078--6911Chr09:22202757..22202781 (25 bp)
GTATGACGCTGCAAGAATCCTCCAC
LOC_Os09g38600
Os.52115.1.S1_at--183--2031Chr09:22202780..22202804 (25 bp)
ACTACTTTGATGTCTGCTACACGCA
LOC_Os09g38600
Os.52115.1.S1_at--1046--1051Chr09:22203508..22203532 (25 bp)
AGGGAAGTTCCCTATGCCATATCCT
LOC_Os09g38600
Os.52115.1.S1_at--429--10151NONE
TATCCTCGCAAGCAGCAGGCTGTAA
NONE
Os.52115.1.S1_at--1104--9831Chr09:22203549..22203573 (25 bp)
TAAATGAGCCATTTCTTCCGGATGC
LOC_Os09g38600
Target Sequence 
GACTGGGATCTGTCCACATGGAGCAGGGCAGTGGATTGTTTGGAGCAGGAGGATTGGCGCGAGGACTCTCTGGTCGAGGC
CTCTGACATCTTAATCGACCACAACATCTGCAACGTTGAGCTCTTGCCTAAGATACAGGGGCAACCTACCATGGCTAAAC
TCCACGTTGCTCTTCCCACTCTCAGCTTGACTGATGCTCAGGTTGTTTATGTCATGGGCAAGGTTAACGAATCCGATGAA
AAGGCTGTGCTGCTGTCTATTGACATGGCCAACAGAAGGCTTGATGCAGTATCAGTGTATGACGCTGCAAGAATCCTCCA
CTACTTTGATGTCTGCTACACGCAGTCTACCATCTTCCGATATTCCGCCCCTTCTTCAGGTTTAAATGGAAACCTGAAAC
GACCAGGGAAGTTCCCTATGCCATATCCTCGCAAGCAGCAGGCTGTAAATGAGCCATTTCTTCCGGATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52115.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis