Browse Element(s) Details


Os.7737.1.S1_at

Description gb:AK102179.1
DB_XREF= gi:32987388
TID=Os.7737.1
CNT=15
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.7737 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033086L20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033086L20, full insert sequence.
FL= gb:AK102179.1 gb:AK059452.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3858011/11Cyclic nucleotide-gated ion channel 14, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38530Os.8322.1.S2_at11/119+22167966..22171947Endomembrane protein 70 containing protein, expressed
LOC_Os09g38530Os.8322.1.S1_at11/119+22167966..22171947Endomembrane protein 70 containing protein, expressed
LOC_Os09g38540Os.9448.1.A1_at11/119+22172359..22173921Plastocyanin-like domain containing protein, expressed
LOC_Os09g38540Os.9448.1.A2_at11/119+22172359..22173921Plastocyanin-like domain containing protein, expressed
LOC_Os09g38550Os.46329.1.S1_at11/119+22173255..22177767Protein phosphatase 2C containing protein, expressed
LOC_Os09g38560Os.3767.1.S1_at7/119+22181283..22182377low temperature and salt responsive protein, putative, expressed
LOC_Os09g38570Os.7942.1.S1_at10/119+22187611..22191213expressed protein
LOC_Os09g38580Os.7737.1.S1_at11/119+22192244..22196704Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os09g38590NANA9+22199384..22200076hypothetical protein
LOC_Os09g38600Os.52115.1.S1_at10/119+22201597..22203686expressed protein
LOC_Os09g38610NANA9+22207524..22208021hypothetical protein
LOC_Os09g38620Os.54125.1.S1_at11/119+22212010..22217764NADPH-cytochrome P450 reductase, putative, expressed
LOC_Os09g38630OsAffx.30191.1.S1_at11/119+22219929..22221506IBR domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0005216molecular_functionion channel activity
GO:0005261molecular_functioncation channel activity
GO:0005267molecular_functionpotassium channel activity
GO:0005516molecular_functioncalmodulin binding
GO:0030551molecular_functioncyclic nucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7737.1.S1_at--48--131Chr09:22196107..22196131 (25 bp)
ATTTCCCGCTTTCGACGAGGACAGT
LOC_Os09g38580
Os.7737.1.S1_at--491--10471Chr09:22196140..22196164 (25 bp)
TTACAGAGGTTGAGGCCTTTGCCCT
LOC_Os09g38580
Os.7737.1.S1_at--617--1231Chr09:22196182..22196206 (25 bp)
AGTTCGTCGCGAACCAGTTCAGAAG
LOC_Os09g38580
Os.7737.1.S1_at--730--1651Chr09:22196325..22196349 (25 bp)
AGCCTGAGCCGGTGGGAATCATACT
LOC_Os09g38580
Os.7737.1.S1_at--374--8191Chr09:22196339..22196363 (25 bp)
GGAATCATACTCATGGTGGCCAGAA
LOC_Os09g38580
Os.7737.1.S1_at--135--3491Chr09:22196391..22196415 (25 bp)
CAGGAGGGCACTTCAAGCAGTACCA
LOC_Os09g38580
Os.7737.1.S1_at--1134--5691Chr09:22196417..22196441 (25 bp)
GACTATTGCTGAGAGTGCCATTGCT
LOC_Os09g38580
Os.7737.1.S1_at--550--10651Chr09:22196465..22196489 (25 bp)
TTCCAGAAGGTTCCGTGCCGACGAT
LOC_Os09g38580
Os.7737.1.S1_at--990--8851Chr09:22196516..22196540 (25 bp)
TGATGAGCCTGACTTCTCTGCAGAT
LOC_Os09g38580
Os.7737.1.S1_at--823--51Chr09:22196548..22196571 (24 bp)
ATTGAGGCTGATGTTTCCTGCTTTT
LOC_Os09g38580
Os.7737.1.S1_at--789--2351Chr09:22196587..22196611 (25 bp)
AAACCACTACTGTGCACTGCATTGT
LOC_Os09g38580
Target Sequence 
ATTTCCCGCTTTCGACGAGGACAGTGCAGAGCCTTACAGAGGTTGAGGCCTTTGCCCTGAGAGCCGAGGACCTCAAGTTC
GTCGCGAACCAGTTCAGAAGACTACACAGCAAGAAGCTCCAGCACACGTTCCGGTTCTACTCCCACCATTGGAGGACATG
GGCTGCCTGCTTCATCCAGGCTGCTTGGCGGCAGCACCAGAGGAGAAAGCTGGCAGAGAGCCTGAGCCGGTGGGAATCAT
ACTCATGGTGGCCAGAAGAACATCCACCNGCTGACAAGCCTAAACAGGAGGGCACTTCAAGCAGTACCANGACTATTGCT
GAGAGTGCCATTGCTCAAATGCACAAGTTCGCCTCCGCTTCCAGAAGGTTCCGTGCCGACGATACCGCCATCCGGAGGCT
GCAGAAGCCTGATGAGCCTGACTTCTCTGCAGATCATTTCGATTGAGGCTGATGTTTCCTGCTTTTAAAAAAACTGTTGT
AAAACCACTACTGTGCACTGCATTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7737.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis