Browse Element(s) Details


Os.8322.1.S2_at

Description gb:AK121320.1
DB_XREF= gi:37990943
TID=Os.8322.1
CNT=26
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8322 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023121L02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023114C04, full insert sequence.
FL= gb:AK121320.1 gb:AK071848.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3853011/11Endomembrane protein 70 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38470OsAffx.30629.1.A1_at1/119+22139618..22143836hypothetical protein
LOC_Os09g38470OsAffx.22026.3.S1_s_at1/119+22139618..22143836hypothetical protein
LOC_Os09g38480NANA9+22145223..22147030hypothetical protein
LOC_Os09g38490OsAffx.22026.3.S1_s_at5/119+22149258..22151335hypothetical protein
LOC_Os09g38490OsAffx.22026.3.S1_at5/119+22149258..22151335hypothetical protein
LOC_Os09g38490OsAffx.22026.1.S1_at3/119+22149258..22151335hypothetical protein
LOC_Os09g38490OsAffx.22026.2.S1_x_at1/119+22149258..22151335hypothetical protein
LOC_Os09g38490OsAffx.22026.2.S1_at1/119+22149258..22151335hypothetical protein
LOC_Os09g38490Os.52115.1.S1_at1/119+22149258..22151335hypothetical protein
LOC_Os09g38500Os.14073.1.S1_at11/119+22152200..22155128Mitochondrial glycoprotein, expressed
LOC_Os09g38510Os.50879.1.S1_at10/119+22156447..22159119purine permease, putative, expressed
LOC_Os09g38520Os.26766.1.S1_at4/119+22160396..22163323DOMON domain containing protein, expressed
LOC_Os09g38530Os.8322.1.S2_at11/119+22167966..22171947Endomembrane protein 70 containing protein, expressed
LOC_Os09g38530Os.8322.1.S1_at11/119+22167966..22171947Endomembrane protein 70 containing protein, expressed
LOC_Os09g38540Os.9448.1.A1_at11/119+22172359..22173921Plastocyanin-like domain containing protein, expressed
LOC_Os09g38540Os.9448.1.A2_at11/119+22172359..22173921Plastocyanin-like domain containing protein, expressed
LOC_Os09g38550Os.46329.1.S1_at11/119+22173255..22177767Protein phosphatase 2C containing protein, expressed
LOC_Os09g38560Os.3767.1.S1_at7/119+22181283..22182377low temperature and salt responsive protein, putative, expressed
LOC_Os09g38570Os.7942.1.S1_at10/119+22187611..22191213expressed protein
LOC_Os09g38580Os.7737.1.S1_at11/119+22192244..22196704Cyclic nucleotide-gated ion channel 14, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016021cellular_componentintegral to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8322.1.S2_at--734--10191Chr09:22171367..22171391 (25 bp)
TATATGCTGCTTTCTACTTCTTCAC
LOC_Os09g38530
Os.8322.1.S2_at--968--8711Chr09:22171415..22171439 (25 bp)
TGTCTGGCATCTTGTACTTTGGGTA
LOC_Os09g38530
Os.8322.1.S2_at--1001--2031Chr09:22171430..22171454 (25 bp)
ACTTTGGGTACATGTTGCTTGCTTC
LOC_Os09g38530
Os.8322.1.S2_at--519--6671Chr09:22171443..22171467 (25 bp)
GTTGCTTGCTTCATTAGCGTTCTTT
LOC_Os09g38530
Os.8322.1.S2_at--1064--4611Chr09:22171459..22171483 (25 bp)
GCGTTCTTTGTGCTTACTGGTACTA
LOC_Os09g38530
Os.8322.1.S2_at--982--10471Chr09:22171472..22171496 (25 bp)
TTACTGGTACTATCGGTTTCTGCGC
LOC_Os09g38530
Os.8322.1.S2_at--250--9491Chr09:22171490..22171514 (25 bp)
TCTGCGCTTGTTTCTGGTTCACGAG
LOC_Os09g38530
Os.8322.1.S2_at--1118--6791Chr09:22171572..22171596 (25 bp)
GTTTTTAAGCCTTCTGAGTCATGGG
LOC_Os09g38530
Os.8322.1.S2_at--203--8831Chr09:22171819..22171843 (25 bp)
TGATTATGAACTGCTTGTACTCTAA
LOC_Os09g38530
Os.8322.1.S2_at--296--7871Chr09:22171849..22171873 (25 bp)
GGTATTATTGACTCTGGCACCAGTA
LOC_Os09g38530
Os.8322.1.S2_at--150--10031Chr09:22171922..22171946 (25 bp)
TAGAATGAAATGTCCCTTTTGCTTT
LOC_Os09g38530
Target Sequence 
TATATGCTGCTTTCTACTTCTTCACGAAGCTGCAGATTACTAAGCTGGTGTCTGGCATCTTGTACTTTGGGTACATGTTG
CTTGCTTCATTAGCGTTCTTTGTGCTTACTGGTACTATCGGTTTCTGCGCTTGTTTCTGGTTCACGAGGTTGATTTACTC
ATCTGTGAAGATTGATTAGTTGCAACACTACAGAGCACAGCATATGTTTTTAAGCCTTCTGAGTCATGGGAATTGTATGT
TCGAAGTGGGGATCAATCCCCTGGGTTTTTTTAAAGAAATTTTCAGTGAAGTTACATTTTAGGTTTTAGTTTATGAACAA
TTTATGTTTGTTATGGCTAAACGATACATCTTACTGTAGTAATTTGGAGTACAAGACTACNAAGGATAGAACACNANTTG
TGATGGAGTTGTTTTTTGGTGAAATTTTTTTAATGGACTGGTATAAGAATTCAATTGATTATGAACTGCTTGTACTCTAA
TCAATGGTATTATTGACTCTGGCACCAGTATGAAATCAATATGATGTACCAGTAACAATTTAATCACTGTTATATTATTA
GAATGAAATGTCCCTTTTGCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8322.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis