Browse Element(s) Details


Os.26766.1.S1_at

Description gb:AK058533.1
DB_XREF= gi:32968551
TID=Os.26766.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.26766 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-017-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-017-A10, full insert sequence.
FL= gb:AK058533.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g385204/11DOMON domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38450Os.48054.1.S1_at11/119+22134382..22136559expressed protein
LOC_Os09g38460NANA9+22138056..22139114hypothetical protein
LOC_Os09g38470OsAffx.30629.1.A1_at1/119+22139618..22143836hypothetical protein
LOC_Os09g38470OsAffx.22026.3.S1_s_at1/119+22139618..22143836hypothetical protein
LOC_Os09g38480NANA9+22145223..22147030hypothetical protein
LOC_Os09g38490OsAffx.22026.3.S1_s_at5/119+22149258..22151335hypothetical protein
LOC_Os09g38490OsAffx.22026.3.S1_at5/119+22149258..22151335hypothetical protein
LOC_Os09g38490OsAffx.22026.1.S1_at3/119+22149258..22151335hypothetical protein
LOC_Os09g38490OsAffx.22026.2.S1_x_at1/119+22149258..22151335hypothetical protein
LOC_Os09g38490OsAffx.22026.2.S1_at1/119+22149258..22151335hypothetical protein
LOC_Os09g38490Os.52115.1.S1_at1/119+22149258..22151335hypothetical protein
LOC_Os09g38500Os.14073.1.S1_at11/119+22152200..22155128Mitochondrial glycoprotein, expressed
LOC_Os09g38510Os.50879.1.S1_at10/119+22156447..22159119purine permease, putative, expressed
LOC_Os09g38520Os.26766.1.S1_at4/119+22160396..22163323DOMON domain containing protein, expressed
LOC_Os09g38530Os.8322.1.S2_at11/119+22167966..22171947Endomembrane protein 70 containing protein, expressed
LOC_Os09g38530Os.8322.1.S1_at11/119+22167966..22171947Endomembrane protein 70 containing protein, expressed
LOC_Os09g38540Os.9448.1.A1_at11/119+22172359..22173921Plastocyanin-like domain containing protein, expressed
LOC_Os09g38540Os.9448.1.A2_at11/119+22172359..22173921Plastocyanin-like domain containing protein, expressed
LOC_Os09g38550Os.46329.1.S1_at11/119+22173255..22177767Protein phosphatase 2C containing protein, expressed
LOC_Os09g38560Os.3767.1.S1_at7/119+22181283..22182377low temperature and salt responsive protein, putative, expressed
LOC_Os09g38570Os.7942.1.S1_at10/119+22187611..22191213expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0008152biological_processmetabolism
GO:0016020cellular_componentmembrane
GO:0004497molecular_functionmonooxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26766.1.S1_at--287--4711Chr09:22160523..22160547 (25 bp)
GCGGCGACACAAGCTCTAGAGGGCA
LOC_Os09g38520
Os.26766.1.S1_at--521--7031Chr09:22160487..22160511 (25 bp)
GTAACACCGAGGAAGACGATTCAGT
LOC_Os09g38520
Os.26766.1.S1_at--596--10391Chr09:22160457..22160481 (25 bp)
TTTTGCATCCTGACAGTACAGACAG
LOC_Os09g38520
Os.26766.1.S1_at--637--3071Chr09:22160424..22160448 (25 bp)
AATCAAGTCCTTCTGGTGTGATGGA
LOC_Os09g38520
Os.26766.1.S1_at--599--8631Chr09:22160304..22160328 (25 bp)
TGGGTGAGATCCACAGGTCGTGATA
NONE
Os.26766.1.S1_at--176--7811Chr09:22160289..22160313 (25 bp)
GGTCGTGATAATTTGCTGCTTCACA
NONE
Os.26766.1.S1_at--624--6351Chr09:22160238..22160262 (25 bp)
GATGCCAGGCAACACAAGATCTCCA
NONE
Os.26766.1.S1_at--65--8231Chr09:22160157..22160181 (25 bp)
GGCACAATTTATTACATTACCCAAG
NONE
Os.26766.1.S1_at--511--7411Chr09:22160133..22160157 (25 bp)
GTGATTCTTTTTCAGTCAGTTTAGA
NONE
Os.26766.1.S1_at--624--7751Chr09:22160085..22160109 (25 bp)
GGTGTTTATTTGCACATTCGCAGCA
NONE
Os.26766.1.S1_at--326--8771Chr09:22160019..22160043 (25 bp)
TGTATCATATCCACTCTGAAGTCGG
NONE
Target Sequence 
GCGGCGACACAAGCTCTAGAGGGCACTGGGTGTTAGGTAACACCGAGGAAGACGATTCAGTTGATCTTTTGCATCCTGAC
AGTACAGACAGGAATTCAGAATCAAGTCCTTCTGGTGTGATGGAGGTCCAGCTTGAACCTCTTGCTAGATGACATATATC
AACATATATTTATCCCCCAGAGTCAGATACAAATACACCAATTCCTATTTTCACATATATGGGTGAGATCCACAGGTCGT
GATAATTTGCTGCTTCACAAGAATCTAGTATTTATATGGCAGGATGATGCCAGGCAACACAAGATCTCCAAACTGTCTTA
AATTTCCTATTTACATTGTATAGTGTACATTTTTGACAAATAGACAGGCACAATTTATTACATTACCCAAGTGATTCTTT
TTCAGTCAGTTTAGAGATAAGAGAGGGATGCTAGTTGAGGTGTTTATTTGCACATTCGCAGCATCATTAGCTGAGCTGTG
TATTGAAGAGAATGCTAGAAACCATGTATCATATCCACTCTGAAGTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26766.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis