Browse Element(s) Details


Os.46329.1.S1_at

Description gb:AK111778.1
DB_XREF= gi:37988441
TID=Os.46329.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.46329 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023081L07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023081L07, full insert sequence.
FL= gb:AK111778.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3855011/11Protein phosphatase 2C containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38490OsAffx.22026.3.S1_s_at5/119+22149258..22151335hypothetical protein
LOC_Os09g38490OsAffx.22026.3.S1_at5/119+22149258..22151335hypothetical protein
LOC_Os09g38490OsAffx.22026.1.S1_at3/119+22149258..22151335hypothetical protein
LOC_Os09g38490OsAffx.22026.2.S1_x_at1/119+22149258..22151335hypothetical protein
LOC_Os09g38490OsAffx.22026.2.S1_at1/119+22149258..22151335hypothetical protein
LOC_Os09g38490Os.52115.1.S1_at1/119+22149258..22151335hypothetical protein
LOC_Os09g38500Os.14073.1.S1_at11/119+22152200..22155128Mitochondrial glycoprotein, expressed
LOC_Os09g38510Os.50879.1.S1_at10/119+22156447..22159119purine permease, putative, expressed
LOC_Os09g38520Os.26766.1.S1_at4/119+22160396..22163323DOMON domain containing protein, expressed
LOC_Os09g38530Os.8322.1.S2_at11/119+22167966..22171947Endomembrane protein 70 containing protein, expressed
LOC_Os09g38530Os.8322.1.S1_at11/119+22167966..22171947Endomembrane protein 70 containing protein, expressed
LOC_Os09g38540Os.9448.1.A1_at11/119+22172359..22173921Plastocyanin-like domain containing protein, expressed
LOC_Os09g38540Os.9448.1.A2_at11/119+22172359..22173921Plastocyanin-like domain containing protein, expressed
LOC_Os09g38550Os.46329.1.S1_at11/119+22173255..22177767Protein phosphatase 2C containing protein, expressed
LOC_Os09g38560Os.3767.1.S1_at7/119+22181283..22182377low temperature and salt responsive protein, putative, expressed
LOC_Os09g38570Os.7942.1.S1_at10/119+22187611..22191213expressed protein
LOC_Os09g38580Os.7737.1.S1_at11/119+22192244..22196704Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os09g38590NANA9+22199384..22200076hypothetical protein
LOC_Os09g38600Os.52115.1.S1_at10/119+22201597..22203686expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46329.1.S1_at--33--6311Chr09:22174470..22174494 (25 bp)
GATGAGTTCATCGTTTTAGCATGTG
LOC_Os09g38550
Os.46329.1.S1_at--360--311Chr09:22173757..22173781 (25 bp)
ATAGCCTATCTGCTGTCTGCGAGAA
LOC_Os09g38550
Os.46329.1.S1_at--606--4611Chr09:22173739..22173763 (25 bp)
GCGAGAAGTTGCTTGACCATTGCTT
LOC_Os09g38550
Os.46329.1.S1_at--90--6311Chr09:22173468..22173492 (25 bp)
GATGATGGCCCAAGCGATCCAAACA
LOC_Os09g38550
Os.46329.1.S1_at--835--2831Chr09:22173444..22173468 (25 bp)
AAGTAGCAGGCCGAGACCGAACCAT
LOC_Os09g38550
Os.46329.1.S1_at--560--5431Chr09:22173426..22173450 (25 bp)
GAACCATGGAGTTCCAACCGGTGAT
LOC_Os09g38550
Os.46329.1.S1_at--643--7671Chr09:22173365..22173389 (25 bp)
GGGATTCTATTCTACAGTCACTATA
LOC_Os09g38550
Os.46329.1.S1_at--1033--7071Chr09:22173349..22173373 (25 bp)
GTCACTATAGGGTTTGTTCTTTCTT
LOC_Os09g38550
Os.46329.1.S1_at--795--2531Chr09:22173322..22173346 (25 bp)
AACTAGCATCTTTTTCTTGCACCAC
LOC_Os09g38550
Os.46329.1.S1_at--289--10331Chr09:22173310..22173334 (25 bp)
TTTCTTGCACCACAACCTGTAATAC
LOC_Os09g38550
Os.46329.1.S1_at--669--331Chr09:22173289..22173313 (25 bp)
ATACATGCCATGTTGCTTAATCGAA
LOC_Os09g38550
Target Sequence 
GATGAGTTCATCGTTTTAGCATGTGATGGCATATGGGATTGCATGTCAAGTCAAGAAGTGGTGGACTTTGTTCACAAAGA
AATGAACACTGAGGNATAGCCTATCTGCTGTCTGCGAGAAGTTGCTTGACCATTGCTTGGNCACCTGTNATCCNGGTGGN
TGATGGCTGTGANTAATATGACNAGTGNATCATAGTCNNAAGTTCNAAGAAGCCNAAGCNNAAGTCAGCNTGCNTACTTC
NAAGCNACAAANTCAATCNTGTCNTCTTCNAGAAGANGATGCGACCAAAAANTTGAGCCNNNANNTNNGNNNNNANCGAG
CTTGATGATGGCCCAAGCGATCCAAACAAGTAGCAGGCCGAGACCGAACCATGGAGTTCCAACCGGTGATAGACAAAAAG
GATAGTAAGTGGTGTATATAAGAAAAGGGATTCTATTCTACAGTCACTATAGGGTTTGTTCTTTCTTTCAACTAGCATCT
TTTTCTTGCACCACAACCTGTAATACATGCCATGTTGCTTAATCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46329.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis