Browse Element(s) Details


OsAffx.22026.3.S1_s_at

Description tigr:9635.m04497
TID=OsAffx.22026.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4476011/11hypothetical protein
LOC_Os09g384905/11hypothetical protein
LOC_Os09g384701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44720Os.51357.1.S1_at11/117+26693218..26700576retrotransposon protein, putative, unclassified, expressed
LOC_Os07g44730OsAffx.28905.1.S1_at10/117+26701807..26703488hypothetical protein
LOC_Os07g44740Os.12190.1.S1_at11/117+26704204..2670619110 kDa chaperonin, putative, expressed
LOC_Os07g44750NANA7+26711365..26712034hypothetical protein
LOC_Os07g44760OsAffx.22026.2.S1_at11/117+26713800..26715490hypothetical protein
LOC_Os07g44760OsAffx.22026.2.S1_x_at11/117+26713800..26715490hypothetical protein
LOC_Os07g44760OsAffx.22026.3.S1_s_at11/117+26713800..26715490hypothetical protein
LOC_Os07g44760OsAffx.22026.1.S1_at10/117+26713800..26715490hypothetical protein
LOC_Os07g44760OsAffx.22026.3.S1_at9/117+26713800..26715490hypothetical protein
LOC_Os07g44760Os.52115.1.S1_at1/117+26713800..26715490hypothetical protein
LOC_Os07g44770Os.53868.1.S1_s_at11/117+26717278..26719827expressed protein
LOC_Os07g44770Os.53868.1.S1_at10/117+26717278..26719827expressed protein
LOC_Os07g44780Os.37457.1.S1_at11/117+26725943..26728284GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os07g44780Os.46863.1.S1_at1/117+26725943..26728284GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os07g44780Os.20309.1.S1_at1/117+26725943..26728284GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os07g44790Os.3933.1.S1_a_at11/117+26729333..26731587Trafficking protein particle complex subunit 3, putative, expressed
LOC_Os07g44800Os.45950.1.A1_at11/117+26732964..26736557SWI/SNF-related matrix-associated actin-dependent regulatorof chromatin subfamily A member 3-like 1, putative, expressed
LOC_Os07g44810NANA7+26739375..26739920transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22026.3.S1_s_at--583--8392Chr09:22150374..22150394 (21 bp)
TGGCGGTTGACATGGCCAACAAAAG
LOC_Os09g38490
OsAffx.22026.3.S1_s_at--1068--2431Chr07:26714720..26714744 (25 bp)
AAAAGGCTTCAAACGGTGTCTGTGT
LOC_Os07g44760
OsAffx.22026.3.S1_s_at--140--1931Chr07:26714708..26714732 (25 bp)
ACGGTGTCTGTGTATGACGCCGAGA
LOC_Os07g44760
OsAffx.22026.3.S1_s_at--408--9411Chr07:26714680..26714704 (25 bp)
TCGTCGACGACTTTGATTACTCCTA
LOC_Os07g44760
OsAffx.22026.3.S1_s_at--305--10272Chr09:22150441..22150465 (25 bp)
TTTGATTACTCCTACACGCAGTCTA
LOC_Os09g38490
OsAffx.22026.3.S1_s_at--258--472Chr09:22150468..22150492 (25 bp)
ATCTCCCAATATTTCACTACAGCTG
LOC_Os09g38490
OsAffx.22026.3.S1_s_at--83--6011Chr07:26713944..26713968 (25 bp)
GAGACCTTTGAAATTTCATGCGCAA
LOC_Os07g44760
OsAffx.22026.3.S1_s_at--1145--171Chr07:26713932..26713956 (25 bp)
ATTTCATGCGCAATATCCTCACAAG
LOC_Os07g44760
OsAffx.22026.3.S1_s_at--863--5192Chr09:22151188..22151212 (25 bp)
GCAATATCCTCACAAGCGGCTGGGT
LOC_Os09g38490
OsAffx.22026.3.S1_s_at--56--8091Chr07:26713885..26713909 (25 bp)
GGAGCGATAATCCTATGGACTTGCA
LOC_Os07g44760
OsAffx.22026.3.S1_s_at--647--8133Chr09:22143743..22143767 (25 bp)
GGACTTGCATGAGCCATTGCAACTG
LOC_Os09g38470
Target Sequence 
TGGCGGTTGACATGGCCAACAAAAGGCTTCAAACGGTGTCTGTGTATGACGCCGAGAGGATCGTCGACGACTTTGATTAC
TCCTACACGCAGTCTACCATCTCCCAATATTTCACTACAGCTGCAGGTGTAAAGGGAAACCTGAAGAGACCTTTGAAATT
TCATGCGCAATATCCTCACAAGCGGCTGGGTGAAACAATCAGCAGGAGCGATAATCCTATGGACTTGCATGAGCCATTGC
AACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22026.3.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis