Browse Element(s) Details


OsAffx.22026.2.S1_x_at

Description gb:NM_188821.1
DB_XREF= gi:34904725
GEN=OJ1003_C06.4
TID=OsAffx.22026.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (OJ1003_C06.4), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4476011/11hypothetical protein
LOC_Os09g384901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44720Os.51357.1.S1_at11/117+26693218..26700576retrotransposon protein, putative, unclassified, expressed
LOC_Os07g44730OsAffx.28905.1.S1_at10/117+26701807..26703488hypothetical protein
LOC_Os07g44740Os.12190.1.S1_at11/117+26704204..2670619110 kDa chaperonin, putative, expressed
LOC_Os07g44750NANA7+26711365..26712034hypothetical protein
LOC_Os07g44760OsAffx.22026.2.S1_at11/117+26713800..26715490hypothetical protein
LOC_Os07g44760OsAffx.22026.2.S1_x_at11/117+26713800..26715490hypothetical protein
LOC_Os07g44760OsAffx.22026.3.S1_s_at11/117+26713800..26715490hypothetical protein
LOC_Os07g44760OsAffx.22026.1.S1_at10/117+26713800..26715490hypothetical protein
LOC_Os07g44760OsAffx.22026.3.S1_at9/117+26713800..26715490hypothetical protein
LOC_Os07g44760Os.52115.1.S1_at1/117+26713800..26715490hypothetical protein
LOC_Os07g44770Os.53868.1.S1_s_at11/117+26717278..26719827expressed protein
LOC_Os07g44770Os.53868.1.S1_at10/117+26717278..26719827expressed protein
LOC_Os07g44780Os.37457.1.S1_at11/117+26725943..26728284GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os07g44780Os.46863.1.S1_at1/117+26725943..26728284GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os07g44780Os.20309.1.S1_at1/117+26725943..26728284GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os07g44790Os.3933.1.S1_a_at11/117+26729333..26731587Trafficking protein particle complex subunit 3, putative, expressed
LOC_Os07g44800Os.45950.1.A1_at11/117+26732964..26736557SWI/SNF-related matrix-associated actin-dependent regulatorof chromatin subfamily A member 3-like 1, putative, expressed
LOC_Os07g44810NANA7+26739375..26739920transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22026.2.S1_x_at--81--871Chr07:26715402..26715426 (25 bp)
ATGGCGGCGACCCTCTGGATGCACA
LOC_Os07g44760
OsAffx.22026.2.S1_x_at--1039--652Chr09:22149340..22149364 (25 bp)
ATGCACACCAGCCTCTACCATGGAT
LOC_Os09g38490
OsAffx.22026.2.S1_x_at--305--8591Chr07:26715260..26715284 (25 bp)
TGGTATCCTACATCTGTGCCTGGTC
LOC_Os07g44760
OsAffx.22026.2.S1_x_at--330--7291Chr07:26715245..26715269 (25 bp)
GTGCCTGGTCCATTTGACGAACAAG
LOC_Os07g44760
OsAffx.22026.2.S1_x_at--770--5791Chr07:26715230..26715254 (25 bp)
GACGAACAAGGTAATTACTCTGGAT
LOC_Os07g44760
OsAffx.22026.2.S1_x_at--1045--7631Chr07:26715197..26715221 (25 bp)
GGGAGAGGTGGCCTTCATTGATCTC
LOC_Os07g44760
OsAffx.22026.2.S1_x_at--674--7611Chr07:26715167..26715191 (25 bp)
GGGAATTAATCCACATCTGCAACGT
LOC_Os07g44760
OsAffx.22026.2.S1_x_at--561--9331Chr07:26715140..26715164 (25 bp)
TCGCCCATGGCTGTCCTGGAAGTCA
LOC_Os07g44760
OsAffx.22026.2.S1_x_at--761--8691Chr07:26715129..26715153 (25 bp)
TGTCCTGGAAGTCACCTGCCACTGC
LOC_Os07g44760
OsAffx.22026.2.S1_x_at--435--1371Chr07:26715100..26715124 (25 bp)
AGAGCTCATCAACTCTCCAATGAGC
LOC_Os07g44760
OsAffx.22026.2.S1_x_at--1073--2531Chr07:26715090..26715114 (25 bp)
AACTCTCCAATGAGCTTCAATACCT
LOC_Os07g44760
Target Sequence 
ATGGCGGCGACCCTCTGGATGCACACCAGCCTCTACCATGGATCCTCCTCGACGTCCGCGCCTACATCGCCGACCGCCGG
AACTCCACCACCGCCGCCGCCGATCTCGGCAACGGCCACCATCTTTACCGCCCCACCGCCGCTGGTATCCTACATCTGTG
CCTGGTCCATTTGACGAACAAGGTAATTACTCTGGATGAGGGGCAGGGAGAGGTGGCCTTCATTGATCTCAAGCGGGGAA
TTAATCCACATCTGCAACGTGCTCGCCCATGGCTGTCCTGGAAGTCACCTGCCACTGCCGCCAGAGCTCATCAACTCTCC
AATGAGCTTCAATACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22026.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis