Browse Element(s) Details


Os.12190.1.S1_at

Description gb:AK122129.1
DB_XREF= gi:37991775
TID=Os.12190.1
CNT=66
FEA=FLmRNA
TIER=FL+Stack
STK=18
UG=Os.12190 (NCBI UniGene Cluster)
UG_TITLE=10 kDa chaperonin mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033132M21, full insert sequence.
FL= gb:AF009413.1 gb:AK059154.1 gb:AK119728.1 gb:AK122129.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4474011/1110 kDa chaperonin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44710Os.26585.1.A1_at11/117+26681343..26687013CDPK-related protein kinase, putative, expressed
LOC_Os07g44710OsAffx.28904.1.S1_at5/117+26681343..26687013CDPK-related protein kinase, putative, expressed
LOC_Os07g44720Os.51357.1.S1_at11/117+26693218..26700576retrotransposon protein, putative, unclassified, expressed
LOC_Os07g44730OsAffx.28905.1.S1_at10/117+26701807..26703488hypothetical protein
LOC_Os07g44740Os.12190.1.S1_at11/117+26704204..2670619110 kDa chaperonin, putative, expressed
LOC_Os07g44750NANA7+26711365..26712034hypothetical protein
LOC_Os07g44760OsAffx.22026.2.S1_at11/117+26713800..26715490hypothetical protein
LOC_Os07g44760OsAffx.22026.2.S1_x_at11/117+26713800..26715490hypothetical protein
LOC_Os07g44760OsAffx.22026.3.S1_s_at11/117+26713800..26715490hypothetical protein
LOC_Os07g44760OsAffx.22026.1.S1_at10/117+26713800..26715490hypothetical protein
LOC_Os07g44760OsAffx.22026.3.S1_at9/117+26713800..26715490hypothetical protein
LOC_Os07g44760Os.52115.1.S1_at1/117+26713800..26715490hypothetical protein
LOC_Os07g44770Os.53868.1.S1_s_at11/117+26717278..26719827expressed protein
LOC_Os07g44770Os.53868.1.S1_at10/117+26717278..26719827expressed protein
LOC_Os07g44780Os.37457.1.S1_at11/117+26725943..26728284GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os07g44780Os.46863.1.S1_at1/117+26725943..26728284GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os07g44780Os.20309.1.S1_at1/117+26725943..26728284GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os07g44790Os.3933.1.S1_a_at11/117+26729333..26731587Trafficking protein particle complex subunit 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0005516molecular_functioncalmodulin binding
GO:0051087molecular_functionchaperone binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12190.1.S1_at--563--991Chr07:26704945..26704969 (25 bp)
AGGATGGCAAGCTGATCCCTGTTGC
LOC_Os07g44740
Os.12190.1.S1_at--714--971Chr07:26704979..26705003 (25 bp)
AGGAGACACTGTTCTCCTGCCTGAA
LOC_Os07g44740
Os.12190.1.S1_at--978--4271Chr07:26704994..26705018 (25 bp)
CCTGCCTGAATATGGTGGACTCGAA
LOC_Os07g44740
Os.12190.1.S1_at--85--8111Chr07:26705010..26705034 (25 bp)
GGACTCGAAGTCAAGCTTGCTGCTG
LOC_Os07g44740
Os.12190.1.S1_at--677--5991Chr07:26705912..26705936 (25 bp)
GAGAGCATGACATCTTGGGCACCCT
LOC_Os07g44740
Os.12190.1.S1_at--1144--8231Chr07:26705929..26705953 (25 bp)
GGCACCCTTGTGGACTGATTTGGAT
LOC_Os07g44740
Os.12190.1.S1_at--795--8831Chr07:26705944..26705968 (25 bp)
TGATTTGGATCGTCATGAACGCCAT
LOC_Os07g44740
Os.12190.1.S1_at--1058--4411Chr07:26705964..26705988 (25 bp)
GCCATCAGTAATCAGTTGCGCTAAT
LOC_Os07g44740
Os.12190.1.S1_at--560--6371Chr07:26706013..26706037 (25 bp)
GATCGACGGGACACAATCCTCCAGA
LOC_Os07g44740
Os.12190.1.S1_at--1072--551Chr07:26706028..26706052 (25 bp)
ATCCTCCAGACACAACTGTCTTTTA
LOC_Os07g44740
Os.12190.1.S1_at--1160--4911Chr07:26706104..26706128 (25 bp)
GCTTCCTTTTATCTGTTGCGATGAA
LOC_Os07g44740
Target Sequence 
AGGATGGCAAGCTGATCCCTGTTGCTCTCAAGGAAAGGAGACACTGTTCTCCTGCCTGAATATGGTGGACTCGAAGTCAA
GCTTGCTGCTGAAAAAGAGTACCTTCTCTTCAGAGAGCATGACATCTTGGGCACCCTTGTGGACTGATTTGGATCGTCAT
GAACGCCATCAGTAATCAGTTGCGCTAATGCAAGGCATGTTTTTTTTAGTATTGGATCGACGGGACACAATCCTCCAGAC
ACAACTGTCTTTTATGATGTCGTAGAATTTTGGCTAAGAACATCATGAACTTGCAAAAGATTGTTGCTTCCTTTTATCTG
TTGCGATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12190.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis