Browse Element(s) Details


Os.3933.1.S1_a_at

Description gb:AK103200.1
DB_XREF= gi:32988409
TID=Os.3933.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3933 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs C74320(E30875),AU088598(C53863),AU166063(E30875), C97298(C53863)~transport protein particle component Bet3-like protein (OJ1003_C06.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033122A14, full insert sequence.
FL= gb:AK103200.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4479011/11Trafficking protein particle complex subunit 3, putative, expressed
LOC_Os03g2840011/11Trafficking protein particle complex subunit 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44740Os.12190.1.S1_at11/117+26704204..2670619110 kDa chaperonin, putative, expressed
LOC_Os07g44750NANA7+26711365..26712034hypothetical protein
LOC_Os07g44760OsAffx.22026.2.S1_at11/117+26713800..26715490hypothetical protein
LOC_Os07g44760OsAffx.22026.2.S1_x_at11/117+26713800..26715490hypothetical protein
LOC_Os07g44760OsAffx.22026.3.S1_s_at11/117+26713800..26715490hypothetical protein
LOC_Os07g44760OsAffx.22026.1.S1_at10/117+26713800..26715490hypothetical protein
LOC_Os07g44760OsAffx.22026.3.S1_at9/117+26713800..26715490hypothetical protein
LOC_Os07g44760Os.52115.1.S1_at1/117+26713800..26715490hypothetical protein
LOC_Os07g44770Os.53868.1.S1_s_at11/117+26717278..26719827expressed protein
LOC_Os07g44770Os.53868.1.S1_at10/117+26717278..26719827expressed protein
LOC_Os07g44780Os.37457.1.S1_at11/117+26725943..26728284GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os07g44780Os.46863.1.S1_at1/117+26725943..26728284GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os07g44780Os.20309.1.S1_at1/117+26725943..26728284GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os07g44790Os.3933.1.S1_a_at11/117+26729333..26731587Trafficking protein particle complex subunit 3, putative, expressed
LOC_Os07g44800Os.45950.1.A1_at11/117+26732964..26736557SWI/SNF-related matrix-associated actin-dependent regulatorof chromatin subfamily A member 3-like 1, putative, expressed
LOC_Os07g44810NANA7+26739375..26739920transposon protein, putative, unclassified
LOC_Os07g44820Os.10976.1.A1_at11/117+26752941..26755838expressed protein
LOC_Os07g44820Os.10976.1.A1_x_at11/117+26752941..26755838expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006888biological_processER to Golgi vesicle-mediated transport
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3933.1.S1_a_at--107--9132Chr07:26730776..26730800 (25 bp)
TGCTGAGGGTACAAGCTGCAGCTTT
LOC_Os07g44790
Os.3933.1.S1_a_at--615--2692Chr07:26730788..26730812 (25 bp)
AAGCTGCAGCTTTGTATTGGAGGAC
LOC_Os07g44790
Os.3933.1.S1_a_at--959--6472Chr07:26730843..26730867 (25 bp)
GATACTTGCCAAGGTCTTCAGTACT
LOC_Os07g44790
Os.3933.1.S1_a_at--680--7812Chr07:26730855..26730879 (25 bp)
GGTCTTCAGTACTGCAATGTGCTAA
LOC_Os07g44790
Os.3933.1.S1_a_at--529--9872Chr07:26731252..26731276 (25 bp)
TACATGGGTCCGTGATATGCTTCGT
LOC_Os07g44790
Os.3933.1.S1_a_at--400--6292Chr07:26731280..26731304 (25 bp)
GATGATGCCTACGAGATGCGAGTGA
LOC_Os07g44790
Os.3933.1.S1_a_at--404--6032Chr07:26731292..26731316 (25 bp)
GAGATGCGAGTGAAGCTTACCAAGC
LOC_Os07g44790
Os.3933.1.S1_a_at--418--2692Chr07:26731304..26731328 (25 bp)
AAGCTTACCAAGCAAGTCCCAGAGG
LOC_Os07g44790
Os.3933.1.S1_a_at--198--1152Chr07:26731318..26731342 (25 bp)
AGTCCCAGAGGAATACCCCTACAAG
LOC_Os07g44790
Os.3933.1.S1_a_at--480--312Chr07:26731330..26731354 (25 bp)
ATACCCCTACAAGGATGATGACTGA
LOC_Os07g44790
Os.3933.1.S1_a_at--16--8572Chr07:26731368..26731392 (25 bp)
TGGATAGTTTCTCAGTTCTCACATG
LOC_Os07g44790
Target Sequence 
TGCTGAGGGTACAAGCTGCAGCTTTGTATTGGAGGACAATCCTCTTGTAGACTTTGTTGAACTTCCNTGATACTTGCCAA
GGTCTTCAGTACTGCAATGTGCTAAGTGGAGTTATTAGGGGTGCACTGGAAATGGTGTCCATGAAGACCGAGGTTACATG
GGTCCGTGATATGCTTCGTGGGGATGATGCCTACGAGATGCGAGTGAAGCTTACCAAGCAAGTCCCAGAGGAATACCCCT
ACAAGGATGATGACTGACTTGACAATTTCGTGGATAGTTTCTCAGTTCTCACATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3933.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis