Browse Element(s) Details


Os.10976.1.A1_x_at

Description gb:CB623982
DB_XREF= gi:29618970
DB_XREF=OSIIEa12B18.r
CLONE=OSIIEa12B18
TID=Os.10976.1
CNT=13
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.10976 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs AU092606(C52561),AU063213(C53672),C27675(C52561)~unknown protein (OJ1003_C06.15), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4482011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44780Os.37457.1.S1_at11/117+26725943..26728284GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os07g44780Os.46863.1.S1_at1/117+26725943..26728284GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os07g44780Os.20309.1.S1_at1/117+26725943..26728284GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os07g44790Os.3933.1.S1_a_at11/117+26729333..26731587Trafficking protein particle complex subunit 3, putative, expressed
LOC_Os07g44800Os.45950.1.A1_at11/117+26732964..26736557SWI/SNF-related matrix-associated actin-dependent regulatorof chromatin subfamily A member 3-like 1, putative, expressed
LOC_Os07g44810NANA7+26739375..26739920transposon protein, putative, unclassified
LOC_Os07g44820Os.10976.1.A1_at11/117+26752941..26755838expressed protein
LOC_Os07g44820Os.10976.1.A1_x_at11/117+26752941..26755838expressed protein
LOC_Os07g44830Os.33874.2.A1_x_at9/117+26766682..26772424proline-rich family protein, putative, expressed
LOC_Os07g44840Os.37200.1.S1_at11/117+26773715..26776982Protein yrdA, putative, expressed
LOC_Os07g44850OsAffx.28906.1.S1_x_at11/117+26778412..26779437PrMC3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10976.1.A1_x_at--697--7731Chr07:26753410..26753434 (25 bp)
GGTGGATCCACAAAATTTGCCGAAA
LOC_Os07g44820
Os.10976.1.A1_x_at--237--1651Chr07:26753383..26753407 (25 bp)
AGCGAACCGGAATTGGCAGCCTAAT
LOC_Os07g44820
Os.10976.1.A1_x_at--429--5011Chr07:26753357..26753381 (25 bp)
GCAGGCCGAGGAATAACAGCAACTT
LOC_Os07g44820
Os.10976.1.A1_x_at--279--711Chr07:26753308..26753332 (25 bp)
ATGAGGCACCAATTCCATCATCCAG
LOC_Os07g44820
Os.10976.1.A1_x_at--903--2311Chr07:26753221..26753245 (25 bp)
AAAGTTAGTCCAGCCAAGTACATAA
LOC_Os07g44820
Os.10976.1.A1_x_at--153--1371Chr07:26753129..26753153 (25 bp)
AGAGCTGTGTTGCTGGTTTGCACTC
LOC_Os07g44820
Os.10976.1.A1_x_at--546--6851Chr07:26753114..26753138 (25 bp)
GTTTGCACTCTCTTTTAACCTTTTG
LOC_Os07g44820
Os.10976.1.A1_x_at--411--10071Chr07:26753035..26753059 (25 bp)
TAGTGCTACTGCCAATCCGAGATGA
LOC_Os07g44820
Os.10976.1.A1_x_at--584--6071Chr07:26753012..26753036 (25 bp)
GAGTTTCTGCAATACCGATCCTGAT
LOC_Os07g44820
Os.10976.1.A1_x_at--1071--6411Chr07:26752990..26753014 (25 bp)
GATCTTGAGCCCCTAAATTTGCTGT
LOC_Os07g44820
Os.10976.1.A1_x_at--481--8911Chr07:26752985..26753009 (25 bp)
TGAGCCCCTAAATTTGCTGTTTGTG
LOC_Os07g44820
Target Sequence 
GGTGGATCCACAAAATTTGCCGAAACAAGCGAACCGGAATTGGCAGCCTAATGGCAGGCCGAGGAATAACAGCAACTTCA
ACAACAACCGGAATTGGTCAAGATGAGGCACCAATTCCATCATCCAGCACCAAGGGATCATAGACTCCCNNCTCCCAATT
CCATCCAAATTTTTCNTCTTTTTNCGGCTAAAGTTAGTCCAGCCAAGTACATAAACAGCAATAAGGCTTTCCTTCAAAAC
TTGCTTCCAGTGCNNCACACACACACCACAAACACTTNTTGAGAGCTGTGTTGCTGGTTTGCACTCTCTTTTAACCTTTT
GATCANGATGGCTGGNTTTTTTTTCCTAGTGGTTTGTCAAAAAAACTTGTAAAGATAGTGCTACTGCCAATCCGAGATGA
GTTTCTGCAATACCGATCCTGATCTTGAGCCCCTAAATTTGCTGTTTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10976.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis