Browse Element(s) Details


OsAffx.28906.1.S1_x_at

Description gb:NM_188837.1
DB_XREF= gi:34904757
GEN=OJ1003_C06.21
TID=OsAffx.28906.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (OJ1003_C06.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4485011/11PrMC3, putative, expressed
LOC_Os07g448901/11serine hydrolase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44820Os.10976.1.A1_at11/117+26752941..26755838expressed protein
LOC_Os07g44820Os.10976.1.A1_x_at11/117+26752941..26755838expressed protein
LOC_Os07g44830Os.33874.2.A1_x_at9/117+26766682..26772424proline-rich family protein, putative, expressed
LOC_Os07g44840Os.37200.1.S1_at11/117+26773715..26776982Protein yrdA, putative, expressed
LOC_Os07g44850OsAffx.28906.1.S1_x_at11/117+26778412..26779437PrMC3, putative, expressed
LOC_Os07g44860Os.30311.1.S1_at11/117+26781185..26782868alpha/beta hydrolase fold family protein, putative, expressed
LOC_Os07g44870OsAffx.28907.1.S1_at10/117+26783302..26784429hypothetical protein
LOC_Os07g44880OsAffx.16714.1.S1_x_at9/117+26785165..26785458hypothetical protein
LOC_Os07g44880OsAffx.16714.1.S1_at8/117+26785165..26785458hypothetical protein
LOC_Os07g44890Os.28558.1.S1_at11/117+26789175..26790345serine hydrolase, putative, expressed
LOC_Os07g44890OsAffx.28906.1.S1_x_at1/117+26789175..26790345serine hydrolase, putative, expressed
LOC_Os07g44900Os.22197.1.S1_at1/117+26791757..26792797serine hydrolase, putative, expressed
LOC_Os07g44910Os.29933.1.S1_at11/117+26794498..26795817PrMC3, putative, expressed
LOC_Os07g44920Os.43269.1.S1_x_at3/117+26800833..26801431Dirigent-like protein
LOC_Os07g44930Os.43269.1.S1_x_at1/117+26803569..26804441Dirigent-like protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28906.1.S1_x_at--202--7611Chr07:26778930..26778954 (25 bp)
GGGCAACATGGTGCACCACGTGGCC
LOC_Os07g44850
OsAffx.28906.1.S1_x_at--8--8411Chr07:26779015..26779039 (25 bp)
GGCGCCGTGCTGATCCAGCCATTCT
LOC_Os07g44850
OsAffx.28906.1.S1_x_at--296--2951Chr07:26779081..26779105 (25 bp)
AAGGCGGCGCTCACGCTGTCGCTAG
LOC_Os07g44850
OsAffx.28906.1.S1_x_at--911--8711Chr07:26779097..26779121 (25 bp)
TGTCGCTAGCGAGGACGGACTACTA
LOC_Os07g44850
OsAffx.28906.1.S1_x_at--1088--3811Chr07:26779112..26779136 (25 bp)
CGGACTACTACTGGCGGGAGTTCCT
LOC_Os07g44850
OsAffx.28906.1.S1_x_at--144--2031Chr07:26779118..26779142 (25 bp)
ACTACTGGCGGGAGTTCCTGCCGGA
LOC_Os07g44850
OsAffx.28906.1.S1_x_at--633--1232Chr07:26779130..26779154 (25 bp)
AGTTCCTGCCGGAGGGCGCCACACG
LOC_Os07g44850
OsAffx.28906.1.S1_x_at--752--491Chr07:26779237..26779261 (25 bp)
ATCGGAGGGTTCGACCTGCTCAAGG
LOC_Os07g44850
OsAffx.28906.1.S1_x_at--125--7731Chr07:26779314..26779338 (25 bp)
GGTGGTGGAGTACCCGGGCGCCATC
LOC_Os07g44850
OsAffx.28906.1.S1_x_at--1124--4331Chr07:26779338..26779362 (25 bp)
CCATGGCTTCTGCTTGTTCCCGGAG
LOC_Os07g44850
OsAffx.28906.1.S1_x_at--891--8291Chr07:26779342..26779366 (25 bp)
GGCTTCTGCTTGTTCCCGGAGCTCG
LOC_Os07g44850
Target Sequence 
GGGCAACATGGTGCACCACGTGGCCCAGCGCTGGGCGGCGGCGTCCGCCGCCTCACCGTCGTCGTCGACGACGCTCCGGC
TCGCCGGCGCCGTGCTGATCCAGCCATTCTTCGGCGGCGAGGAGCGGACGGAGGAGGAGCTGGAGCTCGACAAGGCGGCG
CTCACGCTGTCGCTAGCGAGGACGGACTACTACTGGCGGGAGTTCCTGCCGGAGGGCGCCACACGGGACCACCCGGCGGC
GCACGTGTGCGGCGGCGGCGAGCACGACGTCGAGGTGGCGGAGGCGTTCCCGGCGGCGATGGTGGCGATCGGAGGGTTCG
ACCTGCTCAAGGGGTGGCAGGCGAGGTACGTGGAGGCGCTGCGCGGGAAGGGGAAGGCGGTGCGGGTGGTGGAGTACCCG
GGCGCCATCCATGGCTTCTGCTTGTTCCCGGAGCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28906.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis