Browse Element(s) Details


OsAffx.16714.1.S1_x_at

Description gb:NM_188840.1
DB_XREF= gi:34904763
GEN=OJ1003_C06.24
TID=OsAffx.16714.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (OJ1003_C06.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g448809/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44830Os.33874.2.A1_x_at9/117+26766682..26772424proline-rich family protein, putative, expressed
LOC_Os07g44840Os.37200.1.S1_at11/117+26773715..26776982Protein yrdA, putative, expressed
LOC_Os07g44850OsAffx.28906.1.S1_x_at11/117+26778412..26779437PrMC3, putative, expressed
LOC_Os07g44860Os.30311.1.S1_at11/117+26781185..26782868alpha/beta hydrolase fold family protein, putative, expressed
LOC_Os07g44870OsAffx.28907.1.S1_at10/117+26783302..26784429hypothetical protein
LOC_Os07g44880OsAffx.16714.1.S1_x_at9/117+26785165..26785458hypothetical protein
LOC_Os07g44880OsAffx.16714.1.S1_at8/117+26785165..26785458hypothetical protein
LOC_Os07g44890Os.28558.1.S1_at11/117+26789175..26790345serine hydrolase, putative, expressed
LOC_Os07g44890OsAffx.28906.1.S1_x_at1/117+26789175..26790345serine hydrolase, putative, expressed
LOC_Os07g44900Os.22197.1.S1_at1/117+26791757..26792797serine hydrolase, putative, expressed
LOC_Os07g44910Os.29933.1.S1_at11/117+26794498..26795817PrMC3, putative, expressed
LOC_Os07g44920Os.43269.1.S1_x_at3/117+26800833..26801431Dirigent-like protein
LOC_Os07g44930Os.43269.1.S1_x_at1/117+26803569..26804441Dirigent-like protein, expressed
LOC_Os07g44940Os.36008.2.S1_at11/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44940Os.36008.2.S1_x_at11/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44940Os.36008.3.S1_x_at11/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44940Os.36008.1.S1_at11/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44940Os.36008.3.S1_at10/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44950Os.16597.1.S1_s_at11/117+26808105..26811557bZIP transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16714.1.S1_x_at--934--7971Chr07:26785367..26785391 (25 bp)
GGATGCCACAGGAGCAGATCGACCT
LOC_Os07g44880
OsAffx.16714.1.S1_x_at--419--1291Chr07:26785352..26785376 (25 bp)
AGATCGACCTCATCCTGTCGTGGTC
LOC_Os07g44880
OsAffx.16714.1.S1_x_at--49--571Chr07:26785341..26785365 (25 bp)
ATCCTGTCGTGGTCGCCGGAGCCAG
LOC_Os07g44880
OsAffx.16714.1.S1_x_at--1125--4151Chr07:26785310..26785334 (25 bp)
CGCCGCGCTACGACGTGGACATCGG
LOC_Os07g44880
OsAffx.16714.1.S1_x_at--43--9951Chr07:26785302..26785326 (25 bp)
TACGACGTGGACATCGGCCGCCTGC
LOC_Os07g44880
OsAffx.16714.1.S1_x_at--552--491Chr07:26785290..26785314 (25 bp)
ATCGGCCGCCTGCAGATCAGCGACG
LOC_Os07g44880
OsAffx.16714.1.S1_x_at--303--3851Chr07:26785281..26785305 (25 bp)
CTGCAGATCAGCGACGCGCTCAAGG
LOC_Os07g44880
OsAffx.16714.1.S1_x_at--81--2691Chr07:26785218..26785242 (25 bp)
AAGCGGGAGATGGACCGGTACCACA
LOC_Os07g44880
OsAffx.16714.1.S1_x_at--199--3971Chr07:26785203..26785227 (25 bp)
CGGTACCACAAGGAGCAGCAGGAGT
LOC_Os07g44880
OsAffx.16714.1.S1_x_at--889--3691Chr07:26785096..26785120 (25 bp)
CTATGCTGCCGACCATGAGGAGGAA
NONE
OsAffx.16714.1.S1_x_at--687--1371Chr07:26785048..26785072 (25 bp)
AGACGATGATTGTTATGAGGACGAA
NONE
Target Sequence 
GGATGCCACAGGAGCAGATCGACCTCATCCTGTCGTGGTCGCCGGAGCCAGCCCGGCCGCCGCGCTACGACGTGGACATC
GGCCGCCTGCAGATCAGCGACGCGCTCAAGGAGAGGCTGCGGCGGGTGGACGCCGACGACGCGGTGGCCAAGCGGGAGAT
GGACCGGTACCACAAGGAGCAGCAGGAGTGGNNCNAGNNCGANNNCGNCGNCNANNNCTNCNNCTNNGGCTGCGCCTATG
CTGCCGACCATGAGGAGGAAGAAGAAGAAGAAGAACAAGAAGGAGACGATGATTGTTATGAGGACGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16714.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis