Browse Element(s) Details


Os.22197.1.S1_at

Description gb:AK099262.1
DB_XREF= gi:32984471
TID=Os.22197.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22197 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-206-H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023004G05, full insert sequence.
FL= gb:AK070763.1 gb:AK099262.1 gb:AK106075.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2020011/11serine hydrolase, putative, expressed
LOC_Os07g449001/11serine hydrolase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g20160Os.28943.1.S1_x_at5/116+11562590..11565813retrotransposon protein, putative, unclassified
LOC_Os06g20170NANA6+11566715..11572406retrotransposon protein, putative, unclassified
LOC_Os06g20180OsAffx.4880.1.S1_at11/116+11574999..11576595hypothetical protein
LOC_Os06g20190OsAffx.27726.1.S1_at11/116+11580192..11583433Eukaryotic aspartyl protease family protein
LOC_Os06g20190OsAffx.14464.1.S1_x_at1/116+11580192..11583433Eukaryotic aspartyl protease family protein
LOC_Os06g20200Os.22197.1.S1_at11/116+11585344..11586738serine hydrolase, putative, expressed
LOC_Os06g20210OsAffx.22940.1.S1_s_at11/116+11593078..11600631transposon protein, putative, Mutator sub-class
LOC_Os06g20210OsAffx.22940.2.S1_s_at11/116+11593078..11600631transposon protein, putative, Mutator sub-class
LOC_Os06g20210Os.35344.3.S1_x_at10/116+11593078..11600631transposon protein, putative, Mutator sub-class
LOC_Os06g20210OsAffx.22940.5.S1_at10/116+11593078..11600631transposon protein, putative, Mutator sub-class
LOC_Os06g20210OsAffx.22940.2.S1_at9/116+11593078..11600631transposon protein, putative, Mutator sub-class
LOC_Os06g20210OsAffx.22940.5.S1_x_at9/116+11593078..11600631transposon protein, putative, Mutator sub-class
LOC_Os06g20210Os.35344.18.S1_x_at7/116+11593078..11600631transposon protein, putative, Mutator sub-class
LOC_Os06g20210OsAffx.22940.3.S1_x_at6/116+11593078..11600631transposon protein, putative, Mutator sub-class
LOC_Os06g20210OsAffx.31552.2.S1_at1/116+11593078..11600631transposon protein, putative, Mutator sub-class
LOC_Os06g20219Os.55476.1.S1_at1/116+11607603..11608204NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22197.1.S1_at--296--2011Chr06:11586444..11586468 (25 bp)
ACATCCGGAAGCTCGTCGGTGAAAT
LOC_Os06g20200
Os.22197.1.S1_at--742--9392Chr06:11586456..11586480 (25 bp)
TCGTCGGTGAAATCAGGGCGTTCGT
LOC_Os06g20200
Os.22197.1.S1_at--161--4971Chr06:11586489..11586513 (25 bp)
GCATCATGTCCAAGCAATCCATTGC
LOC_Os06g20200
Os.22197.1.S1_at--450--5191Chr06:11586502..11586526 (25 bp)
GCAATCCATTGCTTAGCTGTGATTA
LOC_Os06g20200
Os.22197.1.S1_at--439--4731Chr06:11586517..11586541 (25 bp)
GCTGTGATTACTCCAACTAGCTATA
LOC_Os06g20200
Os.22197.1.S1_at--848--3131Chr06:11586542..11586566 (25 bp)
AATTATCGGAGTGGTTCGTATTTAT
LOC_Os06g20200
Os.22197.1.S1_at--287--8731Chr06:11586572..11586596 (25 bp)
TGTAGTACTTATCTTTTGAGGGAAC
LOC_Os06g20200
Os.22197.1.S1_at--701--6091Chr06:11586618..11586642 (25 bp)
GAGTAATTACTCTCCATAGATGTTT
LOC_Os06g20200
Os.22197.1.S1_at--455--3571Chr06:11586632..11586656 (25 bp)
CATAGATGTTTTCGGTTCGTTCAAA
LOC_Os06g20200
Os.22197.1.S1_at--1025--5591Chr06:11586662..11586686 (25 bp)
GAAATTTGCTGATTACTCACTCTGT
LOC_Os06g20200
Os.22197.1.S1_at--650--6551Chr06:11586672..11586696 (25 bp)
GATTACTCACTCTGTTCAGTATTGA
LOC_Os06g20200
Target Sequence 
ACATCCGGAAGCTCGTCGGTGAAATCAGGGCGTTCGTGGAAGACAGCATCATGTCCAAGCAATCCATTGCTTAGCTGTGA
TTACTCCAACTAGCTATAAATTATCGGAGTGGTTCGTATTTATATAATTGTAGTACTTATCTTTTGAGGGAACTTAATTA
TAGTACTTATAATGGAGTAATTACTCTCCATAGATGTTTTCGGTTCGTTCAAACTTTTGAAATTTGCTGATTACTCACTC
TGTTCAGTATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22197.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis