Browse Element(s) Details


OsAffx.27726.1.S1_at

Description tigr:9634.m01960
TID=OsAffx.27726.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Eukaryotic aspartyl protease, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2019011/11Eukaryotic aspartyl protease family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g20140OsAffx.4879.1.S1_at11/116+11551915..11555903Eukaryotic aspartyl protease family protein
LOC_Os06g20150Os.27789.1.A1_at11/116+11558586..11559930Peroxidase 1 precursor, putative, expressed
LOC_Os06g20160Os.28943.1.S1_x_at5/116+11562590..11565813retrotransposon protein, putative, unclassified
LOC_Os06g20170NANA6+11566715..11572406retrotransposon protein, putative, unclassified
LOC_Os06g20180OsAffx.4880.1.S1_at11/116+11574999..11576595hypothetical protein
LOC_Os06g20190OsAffx.27726.1.S1_at11/116+11580192..11583433Eukaryotic aspartyl protease family protein
LOC_Os06g20190OsAffx.14464.1.S1_x_at1/116+11580192..11583433Eukaryotic aspartyl protease family protein
LOC_Os06g20200Os.22197.1.S1_at11/116+11585344..11586738serine hydrolase, putative, expressed
LOC_Os06g20210OsAffx.22940.1.S1_s_at11/116+11593078..11600631transposon protein, putative, Mutator sub-class
LOC_Os06g20210OsAffx.22940.2.S1_s_at11/116+11593078..11600631transposon protein, putative, Mutator sub-class
LOC_Os06g20210Os.35344.3.S1_x_at10/116+11593078..11600631transposon protein, putative, Mutator sub-class
LOC_Os06g20210OsAffx.22940.5.S1_at10/116+11593078..11600631transposon protein, putative, Mutator sub-class
LOC_Os06g20210OsAffx.22940.2.S1_at9/116+11593078..11600631transposon protein, putative, Mutator sub-class
LOC_Os06g20210OsAffx.22940.5.S1_x_at9/116+11593078..11600631transposon protein, putative, Mutator sub-class
LOC_Os06g20210Os.35344.18.S1_x_at7/116+11593078..11600631transposon protein, putative, Mutator sub-class
LOC_Os06g20210OsAffx.22940.3.S1_x_at6/116+11593078..11600631transposon protein, putative, Mutator sub-class
LOC_Os06g20210OsAffx.31552.2.S1_at1/116+11593078..11600631transposon protein, putative, Mutator sub-class
LOC_Os06g20219Os.55476.1.S1_at1/116+11607603..11608204NA

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0003677molecular_functionDNA binding
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27726.1.S1_at--219--1631Chr06:11582936..11582960 (25 bp)
AGCGGCTTATCGTTCACGCCGATGC
LOC_Os06g20190
OsAffx.27726.1.S1_at--321--7791Chr06:11582974..11582998 (25 bp)
GGTGCCGACGTTCTACATCGTGACG
LOC_Os06g20190
OsAffx.27726.1.S1_at--756--3931Chr06:11583134..11583158 (25 bp)
CGGAGCGCCATGTCCGAGTACCGGC
LOC_Os06g20190
OsAffx.27726.1.S1_at--570--5771Chr06:11583232..11583256 (25 bp)
GACGATCTCCCTGACGTTCAGTGGC
LOC_Os06g20190
OsAffx.27726.1.S1_at--876--3851Chr06:11583242..11583266 (25 bp)
CTGACGTTCAGTGGCGGCGCCACGA
LOC_Os06g20190
OsAffx.27726.1.S1_at--522--9451Chr06:11583292..11583316 (25 bp)
TCTGGTCGACGGCTGCCTTGCCTTC
LOC_Os06g20190
OsAffx.27726.1.S1_at--956--3631Chr06:11583313..11583337 (25 bp)
CTTCGCCGGAGCAGGGACGGACAAC
LOC_Os06g20190
OsAffx.27726.1.S1_at--1033--5611Chr06:11583332..11583356 (25 bp)
GACAACGCCATTGGAATCATTGGCA
LOC_Os06g20190
OsAffx.27726.1.S1_at--782--411Chr06:11583347..11583371 (25 bp)
ATCATTGGCAACGTGAACCAACGCA
LOC_Os06g20190
OsAffx.27726.1.S1_at--1135--1691Chr06:11583363..11583387 (25 bp)
ACCAACGCACGTTCGAGGTTCTGTA
LOC_Os06g20190
OsAffx.27726.1.S1_at--717--6151Chr06:11583377..11583401 (25 bp)
GAGGTTCTGTACGATTCTGGCAAGG
LOC_Os06g20190
Target Sequence 
AGCGGCTTATCGTTCACGCCGATGCGCCGCCTCCCCTCGGTGCCGACGTTCTACATCGTGACGCTCACCGGCATCAGCGT
CGGCGGTGCGCCGCTCGCCATCCCGCCGTCGGCGTTCTCGAGCGGCATGGTCATCGACTCCGGCACGGTCATCACGGGGC
TCCCGGCGACGGCCTACGCGGCGCTCCGGTCAGCGTTCCGGAGCGCCATGTCCGAGTACCGGCTCCTGCCGCCGTCGAAC
GGCGGCGTGCTCGACACGTGCTACGACTTCACCGGACACGCCAACGTCACCGTGCCGACGATCTCCCTGACGTTCAGTGG
CGGCGCCACGATCGACCTCGCTGCGCCGGCGGGTGTTCTGGTCGACGGCTGCCTTGCCTTCGCCGGAGCAGGGACGGACA
ACGCCATTGGAATCATTGGCAACGTGAACCAACGCACGTTCGAGGTTCTGTACGATTCTGGCAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27726.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis