Browse Element(s) Details


Os.27789.1.A1_at

Description gb:CB664444
DB_XREF= gi:29668169
DB_XREF=OSJNEd10C17.r
CLONE=OSJNEd10C17
TID=Os.27789.1
CNT=22
FEA=EST
TIER=Stack
STK=10
UG=Os.27789 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_172018.1 (A.thaliana) putative peroxidase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2015011/11Peroxidase 1 precursor, putative, expressed
LOC_Os06g294702/11Peroxidase 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g20120OsAffx.15511.1.S1_at11/116+11534324..11536445hypothetical protein
LOC_Os06g20130OsAffx.12985.2.S1_x_at11/116+11544630..11548161hypothetical protein
LOC_Os06g20130OsAffx.12985.2.S1_at11/116+11544630..11548161hypothetical protein
LOC_Os06g20130OsAffx.2233.1.S1_x_at1/116+11544630..11548161hypothetical protein
LOC_Os06g20140OsAffx.4879.1.S1_at11/116+11551915..11555903Eukaryotic aspartyl protease family protein
LOC_Os06g20150Os.27789.1.A1_at11/116+11558586..11559930Peroxidase 1 precursor, putative, expressed
LOC_Os06g20160Os.28943.1.S1_x_at5/116+11562590..11565813retrotransposon protein, putative, unclassified
LOC_Os06g20170NANA6+11566715..11572406retrotransposon protein, putative, unclassified
LOC_Os06g20180OsAffx.4880.1.S1_at11/116+11574999..11576595hypothetical protein
LOC_Os06g20190OsAffx.27726.1.S1_at11/116+11580192..11583433Eukaryotic aspartyl protease family protein
LOC_Os06g20190OsAffx.14464.1.S1_x_at1/116+11580192..11583433Eukaryotic aspartyl protease family protein

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27789.1.A1_at--141--1191Chr06:11559444..11559468 (25 bp)
AGTACGCCGGCAGGCTGAGGGCCAG
LOC_Os06g20150
Os.27789.1.A1_at--377--4951Chr06:11559495..11559519 (25 bp)
GCATGATCTCCGAGATGGACCCGGG
LOC_Os06g20150
Os.27789.1.A1_at--355--5072Chr06:16896420..16896444 (25 bp)
GCAGCTACAAGACGTTCGACACCAG
LOC_Os06g29470
Os.27789.1.A1_at--794--3391Chr06:11559541..11559565 (25 bp)
CAGCTACTACCGCCATGTCGCGAAG
LOC_Os06g20150
Os.27789.1.A1_at--1079--1711Chr06:11559611..11559635 (25 bp)
ACCACCAGGGACTACGTGCGGCGGA
LOC_Os06g20150
Os.27789.1.A1_at--1152--4612Chr06:16896579..16896603 (25 bp)
GCGAGTCCATGACCAAGATGGGCAA
LOC_Os06g29470
Os.27789.1.A1_at--1082--9931Chr06:11559749..11559773 (25 bp)
TACGTCATCAACTCGTAGAATGAAT
LOC_Os06g20150
Os.27789.1.A1_at--101--1991Chr06:11559759..11559783 (25 bp)
ACTCGTAGAATGAATCTAGCTAGTT
LOC_Os06g20150
Os.27789.1.A1_at--1120--10471Chr06:11559791..11559815 (25 bp)
TTAATTAATTTAGCCGCACGAGATG
LOC_Os06g20150
Os.27789.1.A1_at--1013--171Chr06:11559798..11559822 (25 bp)
ATTTAGCCGCACGAGATGCATACGT
LOC_Os06g20150
Os.27789.1.A1_at--565--6411Chr06:11559839..11559863 (25 bp)
GATCTTTGTATTATGTCACTTATTA
LOC_Os06g20150
Target Sequence 
AGTACGCCGGCAGGCTGAGGGCCAGGTGCGCGAGCGCCACCGACGAGTCCGGCATGATCTCCGAGATGGACCCGGGCAGC
TACAAGACGTTCGACACCAGCTACTACCGCCATGTCGCGAAGCGGAGGGGGCTCTTCTCCTCCGACGCGTCGCTGCTCAC
CGACGCCACCACCAGGGACTACGTGCGGCGGATCGCCACCGGCAAGTTCGACGCCGAGTTCTTCAGCGACTTCGGCGAGT
CCATGACCAAGATGGGCAACGTCCAGGTGCTCACCGGGGAGGAAGGAGAGATCAGGAAGAAGTGCTACGTCATCAACTCG
TAGAATGAATCTAGCTAGTTAAAAAGCTTAATTAATTTAGCCGCACGAGATGCATACGTGGGGTGTGTTTTAATTGATCT
TTGTATTATGTCACTTATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27789.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis