Browse Element(s) Details


OsAffx.15511.1.S1_at

Description tigr:9634.m01953
TID=OsAffx.15511.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AY072168 putative nucleoid DNA-binding protein cnd41
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2012011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g20070OsAffx.4878.1.S1_at11/116+11508924..11509777hypothetical protein
LOC_Os06g20080OsAffx.4153.1.S1_s_at3/116+11511038..11511710hypothetical protein
LOC_Os06g20080Os.12293.1.S1_a_at1/116+11511038..11511710hypothetical protein
LOC_Os06g20090Os.38062.1.S1_at11/116+11514409..11524786non-repetitive/WGA-negative nucleoporin family protein, putative, expressed
LOC_Os06g20090OsAffx.20517.1.S1_at2/116+11514409..11524786non-repetitive/WGA-negative nucleoporin family protein, putative, expressed
LOC_Os06g20100OsAffx.27724.1.S1_at11/116+11527811..11528314hypothetical protein
LOC_Os06g20110OsAffx.27725.1.S1_at11/116+11531552..11532859Eukaryotic aspartyl protease family protein
LOC_Os06g20120OsAffx.15511.1.S1_at11/116+11534324..11536445hypothetical protein
LOC_Os06g20130OsAffx.12985.2.S1_x_at11/116+11544630..11548161hypothetical protein
LOC_Os06g20130OsAffx.12985.2.S1_at11/116+11544630..11548161hypothetical protein
LOC_Os06g20130OsAffx.2233.1.S1_x_at1/116+11544630..11548161hypothetical protein
LOC_Os06g20140OsAffx.4879.1.S1_at11/116+11551915..11555903Eukaryotic aspartyl protease family protein
LOC_Os06g20150Os.27789.1.A1_at11/116+11558586..11559930Peroxidase 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0003677molecular_functionDNA binding
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15511.1.S1_at--1135--10851Chr06:11535853..11535877 (25 bp)
TTGGCGAAGCCGACGTGCCCCACAA
LOC_Os06g20120
OsAffx.15511.1.S1_at--585--3631Chr06:11535926..11535950 (25 bp)
CTTCCCTAACCATTACGTCATTGAC
LOC_Os06g20120
OsAffx.15511.1.S1_at--142--151Chr06:11535937..11535961 (25 bp)
ATTACGTCATTGACCTCGCCGGCGT
LOC_Os06g20120
OsAffx.15511.1.S1_at--954--8391Chr06:11536034..11536058 (25 bp)
GGCGCTGCCATACACCTACATGAAG
LOC_Os06g20120
OsAffx.15511.1.S1_at--259--331Chr06:11536043..11536067 (25 bp)
ATACACCTACATGAAGCCGTCCATG
LOC_Os06g20120
OsAffx.15511.1.S1_at--698--4051Chr06:11536126..11536150 (25 bp)
CGATGGGCGACCTGGACACGTGCTA
LOC_Os06g20120
OsAffx.15511.1.S1_at--346--5831Chr06:11536134..11536158 (25 bp)
GACCTGGACACGTGCTACAACTTCA
LOC_Os06g20120
OsAffx.15511.1.S1_at--810--1871Chr06:11536171..11536195 (25 bp)
ACGAGGTGCTGATACCGCTCGTCCA
LOC_Os06g20120
OsAffx.15511.1.S1_at--488--7151Chr06:11536243..11536267 (25 bp)
GTCTCGGCGCGGACCAGATGTTCTA
LOC_Os06g20120
OsAffx.15511.1.S1_at--186--1311Chr06:11536258..11536282 (25 bp)
AGATGTTCTACATGTCGGAGCCCGG
LOC_Os06g20120
OsAffx.15511.1.S1_at--180--2531Chr06:11536284..11536308 (25 bp)
AACTTCTTCTCGGTGACGTGCCTGG
LOC_Os06g20120
Target Sequence 
TTGGCGAAGCCGACGTGCCCCACAACCGCACTGCTCGCGTGACGGCGGTGGCGCCGCTGGTGTACGACCCAGCCTTCCCT
AACCATTACGTCATTGACCTCGCCGGCGTGAGCCTCGGCGGCCGCGACATCCCGATCCCGCCCCACGCCGCCACCGCGTC
CGCCGCCATGGTCCTCGACACGGCGCTGCCATACACCTACATGAAGCCGTCCATGTACGCGCCCCTCCGCGACGCGTTCC
GGCGCGCCATGGCGCGGTACCCGCGTGCGCCGGCGATGGGCGACCTGGACACGTGCTACAACTTCACCGGGGTGCGGCAC
GAGGTGCTGATACCGCTCGTCCACCTCACGTTCCGCGGGATCGGCGGCGGCGGCGGCGGCCAGGTCCTGGGTCTCGGCGC
GGACCAGATGTTCTACATGTCGGAGCCCGGCAACTTCTTCTCGGTGACGTGCCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15511.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis