Browse Element(s) Details


OsAffx.2233.1.S1_x_at

Description tigr:9629.m04279
TID=OsAffx.2233.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4435011/11hypothetical protein
LOC_Os06g201301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g44310Os.27848.1.S1_at11/111+25744106..25752571expressed protein
LOC_Os01g44320OsAffx.23657.1.S1_at11/111+25754323..25755180hypothetical protein
LOC_Os01g44330Os.45945.1.S1_at11/111+25765930..25767927Multicopper oxidase family protein, expressed
LOC_Os01g44340OsAffx.21322.1.S1_at11/111+25769450..25770894Pectinesterase family protein
LOC_Os01g44350OsAffx.2233.1.S1_x_at11/111+25772094..25772717hypothetical protein
LOC_Os01g44360Os.23714.1.A1_at11/111+25775244..25777490CBS domain containing protein, expressed
LOC_Os01g44370NANA1+25784429..25784710myb family transcription factor, putative
LOC_Os01g44380OsAffx.21320.1.S1_at11/111+25786072..25786392hypothetical protein
LOC_Os01g44390Os.41164.1.S1_at11/111+25788851..25790532myb family transcription factor, putative, expressed
LOC_Os01g44394Os.7481.1.S1_at11/111+25793211..25801105mRNA-associated protein mrnp 41, putative, expressed
LOC_Os01g44394Os.56992.1.S1_at11/111+25793211..25801105mRNA-associated protein mrnp 41, putative, expressed
LOC_Os01g44394Os.24693.1.A1_s_at1/111+25793211..25801105mRNA-associated protein mrnp 41, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016779molecular_functionnucleotidyltransferase activity
GO:0016798molecular_functionhydrolase activity, acting on glycosyl bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2233.1.S1_x_at--1154--2151Chr01:25772635..25772659 (25 bp)
ACAGCCGCGGCTCCGACATCGATGT
LOC_Os01g44350
OsAffx.2233.1.S1_x_at--764--9291Chr01:25772624..25772648 (25 bp)
TCCGACATCGATGTGCTCGTCGTCG
LOC_Os01g44350
OsAffx.2233.1.S1_x_at--559--4571Chr01:25772502..25772526 (25 bp)
GCGCGCACGTGCCAGTGATCAAGAC
LOC_Os01g44350
OsAffx.2233.1.S1_x_at--507--4591Chr01:25772500..25772524 (25 bp)
GCGCACGTGCCAGTGATCAAGACGA
LOC_Os01g44350
OsAffx.2233.1.S1_x_at--859--5091Chr01:25772498..25772522 (25 bp)
GCACGTGCCAGTGATCAAGACGAGG
LOC_Os01g44350
OsAffx.2233.1.S1_x_at--123--4151Chr01:25772444..25772468 (25 bp)
CGCTGGCGCGTAGGGAGGAGACCTC
LOC_Os01g44350
OsAffx.2233.1.S1_x_at--532--931Chr01:25772429..25772453 (25 bp)
AGGAGACCTCGGTGGACTCGGGCGG
LOC_Os01g44350
OsAffx.2233.1.S1_x_at--535--7231Chr01:25772244..25772268 (25 bp)
GTCGCACGCCATGCCCAGAGAGAAG
LOC_Os01g44350
OsAffx.2233.1.S1_x_at--795--5511Chr01:25772182..25772206 (25 bp)
GAAAAAGAGAGCTGACGTGGATGTC
LOC_Os01g44350
OsAffx.2233.1.S1_x_at--398--6011Chr01:25772176..25772200 (25 bp)
GAGAGCTGACGTGGATGTCTGACAT
LOC_Os01g44350
OsAffx.2233.1.S1_x_at--156--1613Chr09:3835686..3835710 (24 bp)
AGCTGACGTGGATGTCTGACATGTG
NONE
Target Sequence 
ACAGCCGCGGCTCCGACATCGATGTGCTCGTCGTCGGCCCATCCTACGTCGACCGCGACTTCTTCGGCGCGCTTGCCGCC
GCGCTGGCGGAGACGGCGGCTGTCGCCGAGCTCCAGCCTCCAGCCCGTGCCCGGCGCGCACGTGCCAGTGATCAAGACGA
GGTTCCACGGCGTGCAGGTGGACCTCGTGTACGCTGGCGCGTAGGGAGGAGACCTCGGTGGACTCGGGCGGCGAGGGCGA
GCGGCACGTACGGGCGCCGGGACGCGGCCGGCAAGGGCGAGCGCCACGGCCAGGACTCGGCCGGCGGCGCTCCCGCGATG
GACCTGCGGTCGCCGCTGCCGCCGCGTCGCCGGCCGCCAGTTCTCCTCTCCCGCCGATCTCCTCCCCACCCGTCGCACGC
CATGCCCAGAGAGAAGAGTGAGAGAGAGAGAGATGAGGAAGGGAGAGAAGAGGGAAAAAGAGAGCTGACGTGGATGTCTG
ACATGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2233.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis