Browse Element(s) Details


OsAffx.21320.1.S1_at

Description tigr:9629.m04282
TID=OsAffx.21320.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4438011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g44330Os.45945.1.S1_at11/111+25765930..25767927Multicopper oxidase family protein, expressed
LOC_Os01g44340OsAffx.21322.1.S1_at11/111+25769450..25770894Pectinesterase family protein
LOC_Os01g44350OsAffx.2233.1.S1_x_at11/111+25772094..25772717hypothetical protein
LOC_Os01g44360Os.23714.1.A1_at11/111+25775244..25777490CBS domain containing protein, expressed
LOC_Os01g44370NANA1+25784429..25784710myb family transcription factor, putative
LOC_Os01g44380OsAffx.21320.1.S1_at11/111+25786072..25786392hypothetical protein
LOC_Os01g44390Os.41164.1.S1_at11/111+25788851..25790532myb family transcription factor, putative, expressed
LOC_Os01g44394Os.7481.1.S1_at11/111+25793211..25801105mRNA-associated protein mrnp 41, putative, expressed
LOC_Os01g44394Os.56992.1.S1_at11/111+25793211..25801105mRNA-associated protein mrnp 41, putative, expressed
LOC_Os01g44394Os.24693.1.A1_s_at1/111+25793211..25801105mRNA-associated protein mrnp 41, putative, expressed
LOC_Os01g44430NANA1+25803592..25809821ZF-HD protein dimerisation region containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21320.1.S1_at--586--5671Chr01:25786309..25786333 (25 bp)
GACATCGGTGGCACAGCGCCAGTCT
LOC_Os01g44380
OsAffx.21320.1.S1_at--688--8231Chr01:25786300..25786324 (25 bp)
GGCACAGCGCCAGTCTTCGGATGGA
LOC_Os01g44380
OsAffx.21320.1.S1_at--650--2151Chr01:25786297..25786321 (25 bp)
ACAGCGCCAGTCTTCGGATGGAGTG
LOC_Os01g44380
OsAffx.21320.1.S1_at--817--9571Chr01:25786287..25786311 (25 bp)
TCTTCGGATGGAGTGGATGCGGTGT
LOC_Os01g44380
OsAffx.21320.1.S1_at--66--4591Chr01:25786251..25786275 (25 bp)
GCGAATGCCAGGATTTGGGAAGAAA
LOC_Os01g44380
OsAffx.21320.1.S1_at--1118--5271Chr01:25786222..25786246 (25 bp)
GAATGGCAGCGCGAGAGGAGGTGGC
LOC_Os01g44380
OsAffx.21320.1.S1_at--1059--1051Chr01:25786204..25786228 (25 bp)
AGGTGGCGGCCTCAATGATCACAGT
LOC_Os01g44380
OsAffx.21320.1.S1_at--920--7531Chr01:25786202..25786226 (25 bp)
GTGGCGGCCTCAATGATCACAGTGC
LOC_Os01g44380
OsAffx.21320.1.S1_at--581--8351Chr01:25786200..25786224 (25 bp)
GGCGGCCTCAATGATCACAGTGCGA
LOC_Os01g44380
OsAffx.21320.1.S1_at--459--4451Chr01:25786196..25786220 (25 bp)
GCCTCAATGATCACAGTGCGAGAGA
LOC_Os01g44380
OsAffx.21320.1.S1_at--869--8831Chr01:25786189..25786213 (25 bp)
TGATCACAGTGCGAGAGAGATAGAA
LOC_Os01g44380
Target Sequence 
GACATCGGTGGCACAGCGCCAGTCTTCGGATGGAGTGGATGCGGTGTTTGACGGGGAGGCGAATGCCAGGATTTGGGAAG
AAAAGGGGAATGGCAGCGCGAGAGGAGGTGGCGGCCTCAATGATCACAGTGCGAGAGAGATAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21320.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis