Browse Element(s) Details


Os.23714.1.A1_at

Description gb:CA760312
DB_XREF= gi:25804351
DB_XREF=BR060006A10D02.ab1
CLONE=BR060006A10D02.ab1
TID=Os.23714.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.23714 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0663E10.18 (P0663E10.18), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4436011/11CBS domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g44310Os.27848.1.S1_at11/111+25744106..25752571expressed protein
LOC_Os01g44320OsAffx.23657.1.S1_at11/111+25754323..25755180hypothetical protein
LOC_Os01g44330Os.45945.1.S1_at11/111+25765930..25767927Multicopper oxidase family protein, expressed
LOC_Os01g44340OsAffx.21322.1.S1_at11/111+25769450..25770894Pectinesterase family protein
LOC_Os01g44350OsAffx.2233.1.S1_x_at11/111+25772094..25772717hypothetical protein
LOC_Os01g44360Os.23714.1.A1_at11/111+25775244..25777490CBS domain containing protein, expressed
LOC_Os01g44370NANA1+25784429..25784710myb family transcription factor, putative
LOC_Os01g44380OsAffx.21320.1.S1_at11/111+25786072..25786392hypothetical protein
LOC_Os01g44390Os.41164.1.S1_at11/111+25788851..25790532myb family transcription factor, putative, expressed
LOC_Os01g44394Os.7481.1.S1_at11/111+25793211..25801105mRNA-associated protein mrnp 41, putative, expressed
LOC_Os01g44394Os.56992.1.S1_at11/111+25793211..25801105mRNA-associated protein mrnp 41, putative, expressed
LOC_Os01g44394Os.24693.1.A1_s_at1/111+25793211..25801105mRNA-associated protein mrnp 41, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23714.1.A1_at--1043--2351Chr01:25775909..25775933 (25 bp)
AAAGCTGGAGCCGTCTACTGGTGCT
LOC_Os01g44360
Os.23714.1.A1_at--157--3911Chr01:25775926..25775950 (25 bp)
CTGGTGCTGCACCAGTCATTTTGTA
LOC_Os01g44360
Os.23714.1.A1_at--698--1691Chr01:25775956..25776051 (25 bp)
AGCCATCAAGCATATGACAGCCCAT
LOC_Os01g44360
Os.23714.1.A1_at--554--5351Chr01:25776886..25776910 (25 bp)
GAAGATCCTTTTACCAGGACGGCCT
LOC_Os01g44360
Os.23714.1.A1_at--450--5951Chr01:25777065..25777089 (25 bp)
GAGCAATACCAATATTCTGCAGGCA
LOC_Os01g44360
Os.23714.1.A1_at--500--5651Chr01:25777215..25777238 (24 bp)
GACAGAGAGGCATATTCGCCATGTT
LOC_Os01g44360
Os.23714.1.A1_at--492--6931Chr01:25777257..25777281 (25 bp)
GTAGTCGGCATGATTACCATCGGTG
LOC_Os01g44360
Os.23714.1.A1_at--725--1731Chr01:25777272..25777296 (25 bp)
ACCATCGGTGACGTTGTCAAGACAA
LOC_Os01g44360
Os.23714.1.A1_at--733--3051Chr01:25777295..25777319 (25 bp)
AATCGTGGACCAGCAGCACCAAGAA
LOC_Os01g44360
Os.23714.1.A1_at--817--3671Chr01:25777355..25777379 (25 bp)
CTATTAGCACGTATACCTTCGATGA
LOC_Os01g44360
Os.23714.1.A1_at--797--1771Chr01:25777389..25777413 (25 bp)
ACCGTATGCAATTATCCATGGTCTT
LOC_Os01g44360
Target Sequence 
AAAGCTGGAGCCGTCTACTGGTGCTGCACCAGTCATTTTGTACATGAAGCCATCAAGCATATGACAGCCCATAATGTNGG
AGCTCTGGTGGTGCTCAAGTCTGGGGATGAGAAGCAGCTGGCAGGAATCGTAACTGAGAGAGATTTCGCTAGGAAGATCC
TTTTACCAGGACGGCCTTCAGAAGAAACAAGAGTTGGAGACATTATGACAGAAGAGGACAAGCTAATAACAGTGTCGAGC
AATACCAATATTCTGCAGGCAATGGAGCTAATGACAGAGAGGCATATTCGCCATGTTCCTGTTTTTGATGAGAAGGTAGT
CGGCATGATTACCATCGGTGACGTTGTCAAGACAATCGTGGACCAGCAGCACCAAGAAGTAAAACAATTGAAGAAATACA
TTAGAGGAGATTACTATTAGCACGTATACCTTCGATGAAGAACATAAACCGTATGCAATTATCCATGGTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23714.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis