Browse Element(s) Details


OsAffx.23657.1.S1_at

Description tigr:9629.m04276
TID=OsAffx.23657.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4432011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g44280OsAffx.11464.1.S1_at9/111+25735680..25738887expressed protein
LOC_Os01g44280Os.24674.1.S1_at1/111+25735680..25738887expressed protein
LOC_Os01g44290NANA1+25740335..25740811hypothetical protein
LOC_Os01g44310Os.27848.1.S1_at11/111+25744106..25752571expressed protein
LOC_Os01g44320OsAffx.23657.1.S1_at11/111+25754323..25755180hypothetical protein
LOC_Os01g44330Os.45945.1.S1_at11/111+25765930..25767927Multicopper oxidase family protein, expressed
LOC_Os01g44340OsAffx.21322.1.S1_at11/111+25769450..25770894Pectinesterase family protein
LOC_Os01g44350OsAffx.2233.1.S1_x_at11/111+25772094..25772717hypothetical protein
LOC_Os01g44360Os.23714.1.A1_at11/111+25775244..25777490CBS domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23657.1.S1_at--929--9331Chr01:25754863..25754887 (25 bp)
TCGCTATCGTCTATGGCTACATCGC
LOC_Os01g44320
OsAffx.23657.1.S1_at--72--3951Chr01:25754835..25754859 (25 bp)
CGGTTAGAGCCTTTGCCTACTCCGA
LOC_Os01g44320
OsAffx.23657.1.S1_at--201--8131Chr01:25754800..25754824 (25 bp)
GGACACCGAAGAACAGCGGCTGCGA
LOC_Os01g44320
OsAffx.23657.1.S1_at--1153--3391Chr01:25754752..25754776 (25 bp)
CAGCAGGAGGCCGTTGTACGACAAC
LOC_Os01g44320
OsAffx.23657.1.S1_at--333--5991Chr01:25754631..25754655 (25 bp)
GAGACCGATAGGGACATTTTGAACT
LOC_Os01g44320
OsAffx.23657.1.S1_at--880--1691Chr01:25754487..25754511 (25 bp)
AGCCACATGTGTATAACCAAACGAG
LOC_Os01g44320
OsAffx.23657.1.S1_at--7--2393Chr07:18323804..18323823 (20 bp)
AAACGAGCTTTTGGCTTTCTCACAG
NONE
OsAffx.23657.1.S1_at--321--4897Chr09:260842..260880 (25 bp)
GCTTTCTCACAGCTACTTTTCAAAA
NONE
OsAffx.23657.1.S1_at--658--7091Chr01:25754430..25754454 (25 bp)
GTCACAGCCCATAACTGCTTTTATA
LOC_Os01g44320
OsAffx.23657.1.S1_at--156--311Chr01:25754384..25754408 (25 bp)
ATACCCTTAGACTGTGTTTGATTGT
LOC_Os01g44320
OsAffx.23657.1.S1_at--402--10771Chr01:25754354..25754378 (25 bp)
TTGGGAACCTTCTCCTTTGGCACGG
LOC_Os01g44320
Target Sequence 
TCGCTATCGTCTATGGCTACATCGCTCCCGGTTAGAGCCTTTGCCTACTCCGACGGCGGCGGCGGACACCGAAGAACAGC
GGCTGCGACTCGAGAACGCCGTGCAGACGAACAGCAGGAGGCCGTTGTACGACAACGACGACAAGCCAAGGATCTTGGAG
CTAGCCACCCGTGTGCTGGACGAGCTGGTTGAGATGTGCTCCTCCAGCGAGCCTCTGTGGGTGCGGGGCGTCGAGACCGA
TAGGGACATTTTGAACTACGACGAGTACGTGTGCTTGTTCCACCGCGACCACGGTGGTTACGGCGATCGGATGGCCGGCT
GGTCGGTTGAGGCTTACAGTGTGGGGTCCACTCGTCAGGGGAGAAGCTTTTCCAAAAGCCACATGTGTATAACCAAACGA
GCTTTTGGCTTTCTCACAGCTACTTTTCAAAAAGTCACAGCCCATAACTGCTTTTATAAAAGCCACGACCCAACCAAACA
TACCCTTAGACTGTGTTTGATTGTGAAGGTTGGGAACCTTCTCCTTTGGCACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23657.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis