Browse Element(s) Details


OsAffx.11464.1.S1_at

Description tigr:9629.m04271
TID=OsAffx.11464.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g442809/11expressed protein
LOC_Os11g165301/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g44260Os.3379.1.S1_at11/111+25709546..25711525Dihydroflavonol-4-reductase, putative, expressed
LOC_Os01g44270NANA1+25712104..25713629hypothetical protein
LOC_Os01g44280OsAffx.11464.1.S1_at9/111+25735680..25738887expressed protein
LOC_Os01g44280Os.24674.1.S1_at1/111+25735680..25738887expressed protein
LOC_Os01g44290NANA1+25740335..25740811hypothetical protein
LOC_Os01g44310Os.27848.1.S1_at11/111+25744106..25752571expressed protein
LOC_Os01g44320OsAffx.23657.1.S1_at11/111+25754323..25755180hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11464.1.S1_at--64--9391Chr01:25738832..25738856 (25 bp)
TCGATGGAGGGTTCTGTGCTTACTA
LOC_Os01g44280
OsAffx.11464.1.S1_at--144--10611Chr01:25738821..25738845 (25 bp)
TTCTGTGCTTACTACTGCGGTACCG
LOC_Os01g44280
OsAffx.11464.1.S1_at--239--9351Chr01:25738794..25738818 (25 bp)
TCGCTGGTGCCTCTTCTTGCTGTCG
LOC_Os01g44280
OsAffx.11464.1.S1_at--300--8711Chr01:25738774..25738798 (25 bp)
TGTCGCCTCTATCAGCTTAGTCAAC
LOC_Os01g44280
OsAffx.11464.1.S1_at--517--4891NONE
GCTTAGTCAACAACAGAGGTCCATT
NONE
OsAffx.11464.1.S1_at--718--1331Chr01:25737836..25737860 (25 bp)
AGAGGTCCATTTCCTGATTTGCCAC
LOC_Os01g44280
OsAffx.11464.1.S1_at--247--3592Chr11:9126554..9126791 (25 bp)
CATTTCCTGATTTGCCACTGGCTAT
LOC_Os11g16530
OsAffx.11464.1.S1_at--99--9211Chr01:25737817..25737841 (25 bp)
TGCCACTGGCTATATGCTTTTCAGA
LOC_Os01g44280
OsAffx.11464.1.S1_at--653--4891Chr01:25737802..25737826 (25 bp)
GCTTTTCAGAGGGTCAGCCTGATAG
LOC_Os01g44280
OsAffx.11464.1.S1_at--251--9331NONE
TCCCACACAAGAAGCGCTGATCAAC
NONE
OsAffx.11464.1.S1_at--458--8031Chr01:25736419..25736443 (25 bp)
GGAGGGAGTACAATCTTATCATGAG
LOC_Os01g44280
Target Sequence 
TCGATGGAGGGTTCTGTGCTTACTACTGCGGTACCGCCTCGCTGGTGCCTCTTCTTGCTGTCGCCTCTATCAGCTTAGTC
AACAACAGAGGTCCATTTCCTGATTTGCCACTGGCTATATGCTTTTCAGAGGGTCAGCCTGATAGTATTGTTCAGGACAT
TGAAAACATGGTTCGCTTGTTTATAGAAAAGGTTTTGGCACTTGACAAAAGCTTTGTTGACCCACGTTGTTTATTAAATC
CCACACAAGAAGCGCTGATCAACAGGGAATGGAGGGAGTACAATCTTATCATGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11464.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis