Browse Element(s) Details


Os.3379.1.S1_at

Description gb:AB003496.1
DB_XREF= gi:4062937
GEN=dfr
TID=Os.3379.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3379 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for dihydroflavonol 4-reductase, complete cds.
PROD=dihydroflavonol 4-reductase
FL= gb:AB003496.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4426011/11Dihydroflavonol-4-reductase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g44220Os.6732.1.S1_a_at11/111+25680653..25688790Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplast precursor, putative, expressed
LOC_Os01g44230Os.2350.1.S1_at10/111+25689947..25694005X1, putative, expressed
LOC_Os01g44240NANA1+25694293..25694748Zinc finger, C3HC4 type family protein
LOC_Os01g44250Os.30324.2.S1_x_at11/111+25695329..25697854YZ1, putative, expressed
LOC_Os01g44260Os.3379.1.S1_at11/111+25709546..25711525Dihydroflavonol-4-reductase, putative, expressed
LOC_Os01g44270NANA1+25712104..25713629hypothetical protein
LOC_Os01g44280OsAffx.11464.1.S1_at9/111+25735680..25738887expressed protein
LOC_Os01g44280Os.24674.1.S1_at1/111+25735680..25738887expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009718biological_processanthocyanin biosynthesis
GO:0009809biological_processlignin biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0009964biological_processnegative regulation of flavonoid biosynthesis
GO:0042406cellular_componentextrinsic to endoplasmic reticulum membrane
GO:0009985molecular_functiondihydroflavonol(thiole) lyase activity
GO:0016491molecular_functionoxidoreductase activity
GO:0016614molecular_functionoxidoreductase activity, acting on CH-OH group of donors
GO:0016621molecular_functioncinnamoyl-CoA reductase activity
GO:0045552molecular_functiondihydrokaempferol 4-reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3379.1.S1_at--292--631Chr01:25710963..25710987 (25 bp)
ATGCTCGCGGACATGTTCCCGGAGT
LOC_Os01g44260
Os.3379.1.S1_at--197--9171Chr01:25710994..25711018 (25 bp)
TGCCGCGGAGCTTTCCCGGGATCGA
LOC_Os01g44260
Os.3379.1.S1_at--518--1671Chr01:25711033..25711057 (25 bp)
AGCCGGTGCACTTCTCGTCGTGGAA
LOC_Os01g44260
Os.3379.1.S1_at--1050--9631Chr01:25711075..25711099 (25 bp)
TCAGGTTCAGGTACACGCTGGAGGA
LOC_Os01g44260
Os.3379.1.S1_at--824--8451Chr01:25711204..25711228 (25 bp)
TGGCCGGCGAGAAGGAACCGATACT
LOC_Os01g44260
Os.3379.1.S1_at--81--7791Chr01:25711254..25711278 (25 bp)
GGTGCTGAAACAGAAGCGTTGGTCA
LOC_Os01g44260
Os.3379.1.S1_at--422--5691Chr01:25711289..25711313 (25 bp)
GACTAGTGAGTCCAGAGAACGGTAT
LOC_Os01g44260
Os.3379.1.S1_at--736--51Chr01:25711312..25711336 (25 bp)
ATTGAAATTGATCGTGTTTCGCTGC
LOC_Os01g44260
Os.3379.1.S1_at--763--9391Chr01:25711345..25711369 (25 bp)
TCGTTGGCTTCGTCTATTTCACAAT
LOC_Os01g44260
Os.3379.1.S1_at--296--5891Chr01:25711390..25711414 (25 bp)
GAGCGGTTAATCCTGTAAGTTCATA
LOC_Os01g44260
Os.3379.1.S1_at--478--1211Chr01:25711407..25711431 (25 bp)
AGTTCATATGTAACGTACCCATTTG
LOC_Os01g44260
Target Sequence 
ATGCTCGCGGACATGTTCCCGGAGTACGACGTGCCGCGGAGCTTTCCCGGGATCGACGCCGACCACCTCCAGCCGGTGCA
CTTCTCGTCGTGGAAGCTCCTCGCCCACGGGTTCAGGTTCAGGTACACGCTGGAGGACATGTTCGAGGCCGCCGTCCGGA
CGTGCAGGGAGAAGGGGCTTCTCCCGCCGCTGCCGCCACCGCCGACGACGGCCGTGGCCGGAGGAGACGGCTCGGCGGGT
GTGGCCGGCGAGAAGGAACCGATACTGGGGAGGGGGACCGGGACGGCGGTTGGTGCTGAAACAGAAGCGTTGGTCAAATG
AGTGTTGACTAGTGAGTCCAGAGAACGGTATTGAAATTGATCGTGTTTCGCTGCNCCTTGCCTCGTTGGCTTCGTCTATT
TCACAATGCGAGATTTGGAATAAATCAGAGCGGTTAATCCTGTAAGTTCATATGTAACGTACCCATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3379.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis