Browse Element(s) Details


Os.6732.1.S1_a_at

Description gb:AY028314.1
DB_XREF= gi:13540811
TID=Os.6732.1
CNT=34
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6732 (NCBI UniGene Cluster)
DEF=Oryza sativa ADP-glucose pyrophosphorylase large subunit isoform mRNA, complete cds.
PROD=ADP-glucose pyrophosphorylase large subunitisoform
FL= gb:U66041.1 gb:AY028314.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4422011/11Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g44190NANA1+25657787..25658107expressed protein
LOC_Os01g44200Os.31613.2.S1_at9/111+25663424..25673267hypothetical protein
LOC_Os01g44200Os.31613.2.S1_x_at6/111+25663424..25673267hypothetical protein
LOC_Os01g44200Os.41174.1.S1_at4/111+25663424..25673267hypothetical protein
LOC_Os01g44210Os.11136.1.S1_at11/111+25677526..25678384ribosomal protein L31 containing protein, expressed
LOC_Os01g44220Os.6732.1.S1_a_at11/111+25680653..25688790Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplast precursor, putative, expressed
LOC_Os01g44230Os.2350.1.S1_at10/111+25689947..25694005X1, putative, expressed
LOC_Os01g44240NANA1+25694293..25694748Zinc finger, C3HC4 type family protein
LOC_Os01g44250Os.30324.2.S1_x_at11/111+25695329..25697854YZ1, putative, expressed
LOC_Os01g44260Os.3379.1.S1_at11/111+25709546..25711525Dihydroflavonol-4-reductase, putative, expressed
LOC_Os01g44270NANA1+25712104..25713629hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0019252biological_processstarch biosynthesis
GO:0010170cellular_componentglucose-1-phosphate adenylyltransferase complex
GO:0008878molecular_functionglucose-1-phosphate adenylyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6732.1.S1_a_at--884--10351Chr01:25687389..25687413 (25 bp)
TTTTTGATGCTAACTTGGCCCTCAC
LOC_Os01g44220
Os.6732.1.S1_a_at--652--5071Chr01:25687599..25687622 (24 bp)
GCAGCCTCCAAAGTTCGAATTTTAT
LOC_Os01g44220
Os.6732.1.S1_a_at--589--9371Chr01:25687652..25687676 (25 bp)
TCGATACTTACCTCCAGCAAGATTG
LOC_Os01g44220
Os.6732.1.S1_a_at--712--5191Chr01:25687777..25687801 (25 bp)
GCAATAATCTCCGATGGCTGTTCCT
LOC_Os01g44220
Os.6732.1.S1_a_at--73--8331Chr01:25687792..25687816 (25 bp)
GGCTGTTCCTTTAGTGAATGCACCA
LOC_Os01g44220
Os.6732.1.S1_a_at--339--5091Chr01:25687811..25687835 (25 bp)
GCACCATTGAGCATTCTGTCATTGG
LOC_Os01g44220
Os.6732.1.S1_a_at--138--31Chr01:25687831..25687855 (25 bp)
ATTGGAATCTCTTCACGCGTTAGCA
LOC_Os01g44220
Os.6732.1.S1_a_at--373--3351Chr01:25687844..25687868 (25 bp)
CACGCGTTAGCATCGGGTGTGAACT
LOC_Os01g44220
Os.6732.1.S1_a_at--539--5451Chr01:25688254..25688278 (25 bp)
GAACGTGATCATTGCAAACACTCAG
LOC_Os01g44220
Os.6732.1.S1_a_at--687--7271Chr01:25688374..25688398 (25 bp)
GTCCAAGAGTCTGATCACCCTGAAG
LOC_Os01g44220
Os.6732.1.S1_a_at--392--6131Chr01:25688398..25688422 (25 bp)
GAGGGATACTACATAAGGTCTGGAA
LOC_Os01g44220
Target Sequence 
TTTTTGATGCTAACTTGGCCCTCACCGAGCAGCCTCCAAAGTTCGAATTTTATGATCCAAAAACTCCTTTCTTCACCTNC
ACCTCGATACTTACCTCCAGCAAGATTGGAGAAGTGCAAGTNCAAGATCAAAGATGCAATAATCTCCGATGGCTGTTCCT
TTAGTGAATGCACCATTGAGCATTCTGTCATTGGAATCTCTTCACGCGTTAGCATCGGGTGTGAACTCAAGGGATACCAT
GATGATGGGTNCAGATCNAATATGAAACTGAAGAAGAAANCTTNCAAAGCTATTGTTTGAAGGCAAGGTCCCANATTGGT
ATAGGCCGAGAACACAAAGATAAGGAACTGTATCATCGACATGAATGCTAGNAATTGGCAGGAACGTGATCATTGCAAAC
ACTCAGGGGGTCCAAGAGTCTGATCACCCTGAAGAGGGATACTACATAAGGTCTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6732.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis