Browse Element(s) Details


Os.11136.1.S1_at

Description gb:AK062051.1
DB_XREF= gi:32972069
TID=Os.11136.1
CNT=26
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.11136 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative chloroplast 50S ribosomal protein L31 (B1158C05.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-044-B04, full insert sequence.
FL= gb:AK062051.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4421011/11ribosomal protein L31 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g44180Os.51948.1.S1_at2/111+25652950..25653553hypothetical protein
LOC_Os01g44190NANA1+25657787..25658107expressed protein
LOC_Os01g44200Os.31613.2.S1_at9/111+25663424..25673267hypothetical protein
LOC_Os01g44200Os.31613.2.S1_x_at6/111+25663424..25673267hypothetical protein
LOC_Os01g44200Os.41174.1.S1_at4/111+25663424..25673267hypothetical protein
LOC_Os01g44210Os.11136.1.S1_at11/111+25677526..25678384ribosomal protein L31 containing protein, expressed
LOC_Os01g44220Os.6732.1.S1_a_at11/111+25680653..25688790Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplast precursor, putative, expressed
LOC_Os01g44230Os.2350.1.S1_at10/111+25689947..25694005X1, putative, expressed
LOC_Os01g44240NANA1+25694293..25694748Zinc finger, C3HC4 type family protein
LOC_Os01g44250Os.30324.2.S1_x_at11/111+25695329..25697854YZ1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11136.1.S1_at--102--3811Chr01:25678085..25678105 (21 bp)
CTCCCAGAGGATGCGGTGCTCGATG
LOC_Os01g44210
Os.11136.1.S1_at--260--4071Chr01:25678031..25678055 (25 bp)
CGAGGACGCGAAGGTGTACTGCAAC
LOC_Os01g44210
Os.11136.1.S1_at--66--5331Chr01:25677981..25678005 (25 bp)
GAACCAAGCCGGAGTACACGGTGGA
LOC_Os01g44210
Os.11136.1.S1_at--1088--1891Chr01:25677919..25677943 (25 bp)
ACGTCGGCGATGGTCGTCATGGACA
LOC_Os01g44210
Os.11136.1.S1_at--18--5651Chr01:25677898..25677922 (25 bp)
GACAGCCAGATCGAGAAGTTCCGCA
LOC_Os01g44210
Os.11136.1.S1_at--458--4391Chr01:25677864..25677888 (25 bp)
GCCACATCAAGGAGTACTGGCCCGA
LOC_Os01g44210
Os.11136.1.S1_at--453--10731Chr01:25677667..25677691 (25 bp)
TTGCTTGCGCCTCTCGTTACACGTG
LOC_Os01g44210
Os.11136.1.S1_at--761--6711Chr01:25677621..25677645 (25 bp)
GTTCGATCGGTGTTCTCAGTGGATA
LOC_Os01g44210
Os.11136.1.S1_at--211--6731Chr01:25677610..25677634 (25 bp)
GTTCTCAGTGGATACGTGTGATCAT
LOC_Os01g44210
Os.11136.1.S1_at--377--6911Chr01:25677578..25677602 (25 bp)
GTATCGAACTGTTTGTTCTCTGCCT
LOC_Os01g44210
Os.11136.1.S1_at--131--3831Chr01:25677559..25677583 (25 bp)
CTGCCTGTACTCTTTGACATCGATA
LOC_Os01g44210
Target Sequence 
CTCCCAGAGGATGCGGTGCTCGATGCGGAAGAAGGGGCTGCACCCGGAGATCTACGAGGACGCGAAGGTGTACTGCAACG
GGGAGCTGGTGCTGGTGACGGGGGGAACCAAGCCGGAGTACACGGTGGACGTGTGGTCGGGGAACCACCCCTACTACGTC
GGCGACACGTCGGCGATGGTCGTCATGGACAGCCAGATCGAGAAGTTCCGCAAGAAGTGGGGCCACATCAAGGAGTACTG
GCCCGAGGACCAGTGGAGGGAGATGCACCCCGACGGCGACCCGGAGTTCGACCCGGAGGAGGAGGGATCCGCCGGCGCCA
GCTGAGCCCCCGCTTCGCCTCTCGCCTCCGCCGCCGGCCTCGCCGGTGCGGTTTCTCTTGGTTGATTTTGGGAATTGCGT
AAAATGGATTAGCTCCTCTTGCTTGCGCCTCTCGTTACACGTGCATTCGCATTGCTCTCTAGGTGTTCGATCGGTGTTCT
CAGTGGATACGTGTGATCATATTTGTGGTATCGAACTGTTTGTTCTCTGCCTGTACTCTTTGACATCGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11136.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis