Browse Element(s) Details


Os.51948.1.S1_at

Description gb:AK064377.1
DB_XREF= gi:32974395
TID=Os.51948.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51948 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-108-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-D08, full insert sequence.
FL= gb:AK064377.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0161011/11expressed protein
LOC_Os01g441802/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g01570Os.46785.2.S1_x_at5/119+401813..405775retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g01580NANA9+407391..407723hypothetical protein
LOC_Os09g01590Os.15296.1.S1_at11/119+409601..418217ab-hydrolase associated lipase region family protein, expressed
LOC_Os09g01590Os.9810.1.S1_at4/119+409601..418217ab-hydrolase associated lipase region family protein, expressed
LOC_Os09g01600Os.25526.1.S1_at11/119+421295..426050expressed protein
LOC_Os09g01600Os.40235.1.S1_at2/119+421295..426050expressed protein
LOC_Os09g01600Os.27457.1.S1_at2/119+421295..426050expressed protein
LOC_Os09g01610Os.51948.1.S1_at11/119+428888..431329expressed protein
LOC_Os09g01620Os.52200.1.S1_at11/119+436172..441919RNA pseudouridylate synthase family protein, expressed
LOC_Os09g01630Os.6813.1.S1_at11/119+443803..450698transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os09g01640Os.6161.1.S1_at11/119+455264..456840Zinc knuckle family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51948.1.S1_at--508--1011Chr09:430540..430564 (25 bp)
AGGTTGGTCAGTCTCTTCGGCAGCC
LOC_Os09g01610
Os.51948.1.S1_at--949--6191Chr09:430499..430523 (25 bp)
GAGGCACCAGCCCAAGGAAACACAG
LOC_Os09g01610
Os.51948.1.S1_at--1012--8151Chr09:430484..430508 (25 bp)
GGAAACACAGACATTGACACGCAAT
LOC_Os09g01610
Os.51948.1.S1_at--985--1451Chr09:430453..430477 (25 bp)
AGAAGATTGCGTCCTACTTTTTCCT
LOC_Os09g01610
Os.51948.1.S1_at--1016--1351Chr09:430401..430425 (25 bp)
AGAGCACCCCGACTTGTTTAAGGAG
LOC_Os09g01610
Os.51948.1.S1_at--355--10711Chr09:430363..430387 (25 bp)
TTGCTGACAGCAAGGCCAGTGCCCT
LOC_Os09g01610
Os.51948.1.S1_at--532--4351Chr09:430348..430372 (25 bp)
CCAGTGCCCTGGATGCTAAGATCAA
LOC_Os09g01610
Os.51948.1.S1_at--604--1272Chr09:430330..430354 (25 bp)
AGATCAAGCAGCTGACTTTGGCTCA
LOC_Os09g01610
Os.51948.1.S1_at--16--2052Chr09:430316..430340 (25 bp)
ACTTTGGCTCAGGTCAGGGTGTCTT
LOC_Os09g01610
Os.51948.1.S1_at--858--8831Chr09:430264..430288 (25 bp)
TGATCAAGTTGCTGTCGGGCTTCCT
LOC_Os09g01610
Os.51948.1.S1_at--505--9431Chr09:430250..430274 (25 bp)
TCGGGCTTCCTCAAGTGATCATTAT
LOC_Os09g01610
Target Sequence 
AGGTTGGTCAGTCTCTTCGGCAGCCCAAGAAGAAGAAGATGGAGGCACCAGCCCAAGGAAACACAGACATTGACACGCAA
TTCAAGGAGAAGATTGCGTCCTACTTTTTCCTTGGGAAGGTGGTTTCTCTTCTGGATGAAGAGCACCCCGACTTGTTTAA
GGAGGCTTTCTTGAAGCTTGCTGACAGCAAGGCCAGTGCCCTGGATGCTAAGATCAAGCAGCTGACTTTGGCTCAGGTCA
GGGTGTCTTTGAAGGGGCGTGACCTGGAGAAGGAACTGATCAAGTTGCTGTCGGGCTTCCTCAAGTGATCATTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51948.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis