Browse Element(s) Details


Os.27457.1.S1_at

Description gb:AK120591.1
DB_XREF= gi:37990214
TID=Os.27457.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27457 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013145N17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013145N17, full insert sequence.
FL= gb:AK120591.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0289011/11expressed protein
LOC_Os02g265502/11expressed protein
LOC_Os09g016002/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02840Os.45173.1.S1_x_at6/114+1091523..1094759retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02840OsAffx.20877.1.S1_at1/114+1091523..1094759retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02850OsAffx.13629.1.S1_at11/114+1097963..1100386pentatricopeptide, putative, expressed
LOC_Os04g02850OsAffx.13326.1.S1_at1/114+1097963..1100386pentatricopeptide, putative, expressed
LOC_Os04g02860Os.38425.1.S1_at11/114+1100505..1105865NB-ARC domain containing protein, expressed
LOC_Os04g02870Os.18127.1.A1_at10/114+1107699..1112090Arginine/serine-rich splicing factor RSP41, putative, expressed
LOC_Os04g02880Os.36969.1.S1_at4/114+1113164..1113561expressed protein
LOC_Os04g02890Os.27457.1.S1_at11/114+1115814..1121887expressed protein
LOC_Os04g02890Os.27807.2.S1_a_at11/114+1115814..1121887expressed protein
LOC_Os04g02900Os.15076.1.S1_at11/114+1122969..1126811Pyruvate dehydrogenase E1 component alpha subunit, putative, expressed
LOC_Os04g02910Os.11963.1.S2_at11/114+1135888..1139302membrane related protein CP5, putative, expressed
LOC_Os04g02910Os.11963.1.S1_at11/114+1135888..1139302membrane related protein CP5, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27457.1.S1_at--568--8139Chr12:3355199..3355223 (25 bp)
GGACATCATCACTCATTTTTAAAAT
NONE
Os.27457.1.S1_at--915--10338Chr12:3355271..3355295 (25 bp)
TTTTACCATTTTCTATCCTTTACAT
NONE
Os.27457.1.S1_at--722--739Chr12:3355303..3355327 (25 bp)
ATGTTGCCACTTTCATATGTCGAAC
NONE
Os.27457.1.S1_at--1140--9937Chr12:3355488..3355512 (25 bp)
TACCTATTTCGAATACCCAACCTCT
NONE
Os.27457.1.S1_at--415--5119Chr12:3355498..3355522 (25 bp)
GAATACCCAACCTCTAAATCCTGGG
NONE
Os.27457.1.S1_at--209--4411Chr04:1116951..1116975 (25 bp)
GCCACTGCATCAAGCCCAGAAATTT
LOC_Os04g02890
Os.27457.1.S1_at--552--5372Chr04:1116981..1117005 (25 bp)
GAAGAACAACTATCACTTTCCCACT
LOC_Os04g02890
Os.27457.1.S1_at--758--5212Chr04:1117017..1117041 (25 bp)
GAATTCTTTGATAAGCCTGTCAGCT
LOC_Os04g02890
Os.27457.1.S1_at--95--2792Chr04:1117049..1117073 (25 bp)
AAGAGAGTCATCACTTAGCACAAAA
LOC_Os04g02890
Os.27457.1.S1_at--558--1512Chr04:1117081..1117105 (25 bp)
AGCAGTGCCTTTTATCTTAACCATC
LOC_Os04g02890
Os.27457.1.S1_at--588--2632Chr04:1117099..1117123 (25 bp)
AACCATCATAACTACACACTGAGGG
LOC_Os04g02890
Target Sequence 
GGACATCATCACTCATTTTTAAAATATCAAGCATTGAAAAGTTCTCCTCTAAATTGTAAGTTTTTTTTATCATTTTACCA
TTTTCTATCCTTTACATGTTATATATGTTGCCACTTTCATATGTCGAACAATTAGTACTTATATATGTTAAAGAATTTGG
ACTTATGATCAATTCTATCAATTTATAAAGTTATGGCCATATGCTATAATATTATACAATTAGTAATGTGTAATATTATA
CCAATTAATTATTGGACTTCTAGAAGTAAAAAGAATTTTGTTTTACCCCTACCTATTTCGAATACCCAACCTCTAAATCC
TGGGCCCGCCACTGCATCAAGCCCAGAAATTTCAACAGAAGAACAACTATCACTTTCCCACTTCAAAGTGATGGAATTCT
TTGATAAGCCTGTCAGCTAAACATTAAGAGAGTCATCACTTAGCACAAAATTGTACAAGCAGTGCCTTTTATCTTAACCA
TCATAACTACACACTGAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27457.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis