Browse Element(s) Details


Os.15076.1.S1_at

Description gb:AK069299.1
DB_XREF= gi:32979323
TID=Os.15076.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15076 (NCBI UniGene Cluster)
UG_TITLE=Clone Osch141 pyruvate dehydrogenase E1 alpha subunit mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023012M21, full insert sequence.
FL= gb:AK069299.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0290011/11Pyruvate dehydrogenase E1 component alpha subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02850OsAffx.13629.1.S1_at11/114+1097963..1100386pentatricopeptide, putative, expressed
LOC_Os04g02850OsAffx.13326.1.S1_at1/114+1097963..1100386pentatricopeptide, putative, expressed
LOC_Os04g02860Os.38425.1.S1_at11/114+1100505..1105865NB-ARC domain containing protein, expressed
LOC_Os04g02870Os.18127.1.A1_at10/114+1107699..1112090Arginine/serine-rich splicing factor RSP41, putative, expressed
LOC_Os04g02880Os.36969.1.S1_at4/114+1113164..1113561expressed protein
LOC_Os04g02890Os.27457.1.S1_at11/114+1115814..1121887expressed protein
LOC_Os04g02890Os.27807.2.S1_a_at11/114+1115814..1121887expressed protein
LOC_Os04g02900Os.15076.1.S1_at11/114+1122969..1126811Pyruvate dehydrogenase E1 component alpha subunit, putative, expressed
LOC_Os04g02910Os.11963.1.S2_at11/114+1135888..1139302membrane related protein CP5, putative, expressed
LOC_Os04g02910Os.11963.1.S1_at11/114+1135888..1139302membrane related protein CP5, putative, expressed
LOC_Os04g02920Os.52503.1.S1_at10/114+1147740..1153958Leucine Rich Repeat family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005739cellular_componentmitochondrion
GO:0003863molecular_function3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity
GO:0004739molecular_functionpyruvate dehydrogenase (acetyl-transferring) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15076.1.S1_at--1088--2371Chr04:1126314..1126338 (25 bp)
AAACGTGTTCTCAGATCCCAAGGGC
LOC_Os04g02900
Os.15076.1.S1_at--743--8151Chr04:1126358..1126382 (25 bp)
GGAAGTACCGGTGTGAGGATCCCTT
LOC_Os04g02900
Os.15076.1.S1_at--566--891Chr04:1126412..1126436 (25 bp)
AGGCTCAACGAGCACGCTTATCAGT
LOC_Os04g02900
Os.15076.1.S1_at--969--10111Chr04:1126440..1126464 (25 bp)
TATGTCATGCTTTTTCTTGTCTCTC
LOC_Os04g02900
Os.15076.1.S1_at--260--571Chr04:1126479..1126503 (25 bp)
ATCCTAGTTTTTGTCGAACCCATCG
LOC_Os04g02900
Os.15076.1.S1_at--428--5451Chr04:1126494..1126518 (25 bp)
GAACCCATCGTCGTGTTAAGCGTAA
LOC_Os04g02900
Os.15076.1.S1_at--922--7051Chr04:1126520..1126544 (25 bp)
GTAAGCACAACCTACTTCTTCATTT
LOC_Os04g02900
Os.15076.1.S1_at--19--10251Chr04:1126542..1126566 (25 bp)
TTTGTTTCATTCTTAGACCTCCCAT
LOC_Os04g02900
Os.15076.1.S1_at--1065--7411Chr04:1126605..1126629 (25 bp)
GTGTTCGATTTGCTCTTCAGTAGTT
LOC_Os04g02900
Os.15076.1.S1_at--999--5491Chr04:1126642..1126666 (25 bp)
GAACAGCTGGGCCTGTAATCACTCA
LOC_Os04g02900
Os.15076.1.S1_at--416--7411Chr04:1126723..1126747 (25 bp)
GTGATTAGTTTCCTGCCTGTTATAC
LOC_Os04g02900
Target Sequence 
AAACGTGTTCTCAGATCCCAAGGGCTTTGGAATTGGCCCTGACGGGAAGTACCGGTGTGAGGATCCCTTGTTCACGCAAG
GCACGGCCCAAGTCTGAGAGGCTCAACGAGCACGCTTATCAGTTATTATGTCATGCTTTTTCTTGTCTCTCTCTAGCTCT
ACCCTATCCTAGTTTTTGTCGAACCCATCGTCGTGTTAAGCGTAATGTAAGCACAACCTACTTCTTCATTTGTTTCATTC
TTAGACCTCCCATATCAATATGCTCAACTGCTGCCCCAGTTTTTGCTCAGTGTGTTCGATTTGCTCTTCAGTAGTTCTAT
TGGTTTCAGAACAGCTGGGCCTGTAATCACTCACTCCTATGTCTGGACATGCAAAGATACTTCTGGTTTAGAGTTTCAGC
TGAGTTACAGTGATTAGTTTCCTGCCTGTTATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15076.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis