Browse Element(s) Details


OsAffx.13629.1.S1_at

Description tigr:9632.m00192
TID=OsAffx.13629.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0285011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02800NANA4+1074546..1075067retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02810Os.49936.2.A1_at3/114+1076540..1077881retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02810Os.33601.3.S1_x_at1/114+1076540..1077881retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02820Os.28160.1.S1_at11/114+1080525..1085753Elongation factor 2, putative, expressed
LOC_Os04g02830OsAffx.13628.1.S1_s_at11/114+1087317..1089317Peptidyl-prolyl cis-trans isomerase 1, putative, expressed
LOC_Os04g02830OsAffx.13628.1.S1_at11/114+1087317..1089317Peptidyl-prolyl cis-trans isomerase 1, putative, expressed
LOC_Os04g02840Os.45173.1.S1_x_at6/114+1091523..1094759retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02840OsAffx.20877.1.S1_at1/114+1091523..1094759retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02850OsAffx.13629.1.S1_at11/114+1097963..1100386pentatricopeptide, putative, expressed
LOC_Os04g02850OsAffx.13326.1.S1_at1/114+1097963..1100386pentatricopeptide, putative, expressed
LOC_Os04g02860Os.38425.1.S1_at11/114+1100505..1105865NB-ARC domain containing protein, expressed
LOC_Os04g02870Os.18127.1.A1_at10/114+1107699..1112090Arginine/serine-rich splicing factor RSP41, putative, expressed
LOC_Os04g02880Os.36969.1.S1_at4/114+1113164..1113561expressed protein
LOC_Os04g02890Os.27457.1.S1_at11/114+1115814..1121887expressed protein
LOC_Os04g02890Os.27807.2.S1_a_at11/114+1115814..1121887expressed protein
LOC_Os04g02900Os.15076.1.S1_at11/114+1122969..1126811Pyruvate dehydrogenase E1 component alpha subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13629.1.S1_at--472--991Chr04:1099869..1099893 (25 bp)
AGGAGGCGAGCCACTATGTGCTCCT
LOC_Os04g02850
OsAffx.13629.1.S1_at--1105--4391Chr04:1099878..1099902 (25 bp)
GCCACTATGTGCTCCTCTGCAACAT
LOC_Os04g02850
OsAffx.13629.1.S1_at--178--4071Chr04:1099961..1099985 (25 bp)
CGAGGCGTGGCGAAGGAGCCCGGGT
LOC_Os04g02850
OsAffx.13629.1.S1_at--62--1951Chr04:1100004..1100028 (25 bp)
ACGGCGCGATCCACCGGTTCATGGC
LOC_Os04g02850
OsAffx.13629.1.S1_at--790--4071Chr04:1100049..1100073 (25 bp)
CGAGCGAGGAGGTGCACGCGCACAT
LOC_Os04g02850
OsAffx.13629.1.S1_at--505--2171Chr04:1100118..1100142 (25 bp)
ACACGTCGTGCGTGCTCCACGACAT
LOC_Os04g02850
OsAffx.13629.1.S1_at--731--9411Chr04:1100123..1100147 (25 bp)
TCGTGCGTGCTCCACGACATGGACG
LOC_Os04g02850
OsAffx.13629.1.S1_at--319--3991Chr04:1100223..1100247 (25 bp)
CGGGCGCCACCATTAGGGTGGCCAA
LOC_Os04g02850
OsAffx.13629.1.S1_at--287--1851Chr04:1100265..1100289 (25 bp)
ACGACTGCCATGAGGCGGCCAAGTT
LOC_Os04g02850
OsAffx.13629.1.S1_at--888--6031Chr04:1100312..1100336 (25 bp)
GAGATCGTGCTCAGGGATGTCAGAA
LOC_Os04g02850
OsAffx.13629.1.S1_at--14--7331Chr04:1100318..1100342 (25 bp)
GTGCTCAGGGATGTCAGAAGGTTTC
LOC_Os04g02850
Target Sequence 
AGGAGGCGAGCCACTATGTGCTCCTCTGCAACATCTACTCCGCGGCCGGGCAGTGGACTCGGGCGGCGGAGGTGAGGAGC
AGGATGCGGCGGCGAGGCGTGGCGAAGGAGCCCGGGTGCAGCTGGATCGAGGTCGACGGCGCGATCCACCGGTTCATGGC
CGGCGAGTCGGCGCACCCGGCGAGCGAGGAGGTGCACGCGCACATGGAGGCGCTCTGGGGGGAGATGGTGGCGCGCGGGT
ACACGCCGGACACGTCGTGCGTGCTCCACGACATGGACGACGGCGACAAGGCGGCCGTGCTCCGGTGCCACAGCGAGAAG
CTCGCCATCGCGTTCGGGCTGCTCAGGGCGGCGCCGGGCGCCACCATTAGGGTGGCCAAGAACCTGAGGGTGTGCAACGA
CTGCCATGAGGCGGCCAAGTTCTTGTCAAAGATGGTCGGGAGGGAGATCGTGCTCAGGGATGTCAGAAGGTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13629.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis