Browse Element(s) Details


Os.38425.1.S1_at

Description gb:AY336989.1
DB_XREF= gi:33243049
TID=Os.38425.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38425 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) disease related protein 2 mRNA, complete cds.
PROD=disease related protein 2
FL= gb:AY336989.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0286011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02810Os.49936.2.A1_at3/114+1076540..1077881retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02810Os.33601.3.S1_x_at1/114+1076540..1077881retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02820Os.28160.1.S1_at11/114+1080525..1085753Elongation factor 2, putative, expressed
LOC_Os04g02830OsAffx.13628.1.S1_s_at11/114+1087317..1089317Peptidyl-prolyl cis-trans isomerase 1, putative, expressed
LOC_Os04g02830OsAffx.13628.1.S1_at11/114+1087317..1089317Peptidyl-prolyl cis-trans isomerase 1, putative, expressed
LOC_Os04g02840Os.45173.1.S1_x_at6/114+1091523..1094759retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02840OsAffx.20877.1.S1_at1/114+1091523..1094759retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02850OsAffx.13629.1.S1_at11/114+1097963..1100386pentatricopeptide, putative, expressed
LOC_Os04g02850OsAffx.13326.1.S1_at1/114+1097963..1100386pentatricopeptide, putative, expressed
LOC_Os04g02860Os.38425.1.S1_at11/114+1100505..1105865NB-ARC domain containing protein, expressed
LOC_Os04g02870Os.18127.1.A1_at10/114+1107699..1112090Arginine/serine-rich splicing factor RSP41, putative, expressed
LOC_Os04g02880Os.36969.1.S1_at4/114+1113164..1113561expressed protein
LOC_Os04g02890Os.27457.1.S1_at11/114+1115814..1121887expressed protein
LOC_Os04g02890Os.27807.2.S1_a_at11/114+1115814..1121887expressed protein
LOC_Os04g02900Os.15076.1.S1_at11/114+1122969..1126811Pyruvate dehydrogenase E1 component alpha subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38425.1.S1_at--970--291Chr04:1105279..1105303 (25 bp)
ATAGCAGGCTCAGCATTGATCCGCT
LOC_Os04g02860
Os.38425.1.S1_at--363--3632Chr04:1105302..1105326 (25 bp)
CTTCCATCACTCTCCAATTTTTGTA
LOC_Os04g02860
Os.38425.1.S1_at--772--5011Chr04:1105383..1105407 (25 bp)
GCAGGGTGGTTTCCTAAGCTCCAAA
LOC_Os04g02860
Os.38425.1.S1_at--285--851Chr04:1105464..1105488 (25 bp)
ATGGCAAATCTCTACAACCTAGCTC
LOC_Os04g02860
Os.38425.1.S1_at--605--2411Chr04:1105500..1105524 (25 bp)
AAAAATCTGGAGTATTTGCCCCAAG
LOC_Os04g02860
Os.38425.1.S1_at--500--5351Chr04:1105587..1105611 (25 bp)
GAAGATGTACAAGCTGGTTCCTCAT
LOC_Os04g02860
Os.38425.1.S1_at--194--2911Chr04:1105696..1105720 (25 bp)
AAGGTAACCCATGATCTGCTCATCA
LOC_Os04g02860
Os.38425.1.S1_at--660--391Chr04:1105717..1105741 (25 bp)
ATCACCTCATCTTCTATAAGCTGCA
LOC_Os04g02860
Os.38425.1.S1_at--556--9751Chr04:1105742..1105766 (25 bp)
TAATGCATTCTTTTGACCTTCAGTG
LOC_Os04g02860
Os.38425.1.S1_at--231--7411Chr04:1105764..1105788 (25 bp)
GTGATCAATTCCCTATCCTTGCAGA
LOC_Os04g02860
Os.38425.1.S1_at--863--311Chr04:1105833..1105857 (25 bp)
ATACCCGGTCTCCAAGTTATATATA
LOC_Os04g02860
Target Sequence 
ATAGCAGGCTCAGCATTGATCCGCTTCCATCACTCTCCAATTTTTGTAACCTGACCCTTCTTGGTCTGTTCAACACTTAC
AGTGGAGAAAGCTTGCTCTTTCAGGCAGGGTGGTTTCCTAAGCTCCAAACACTCACTTTGGCTGAGCTGCAAAATGTCAA
TTCAATAGTGATACAGGAGTATAGCATGGCAAATCTCTACAACCTAGCTCTCATCTGCTTGAAAAATCTGGAGTATTTGC
CCCAAGGCATGGAATTCCTAAAATCTGTTGAAGAGTTCAATCTAGTGGGCATGCACCACAAGTTCATGGAAGATGTACAA
GCTGGTTCCTCATATGAGAAAGTCAAACACATACCGGTAGTTGACTACTTTGACCAAAGCAAAGGGAGGTGGGATCGACT
TTCACGAGTTTATGGCAAAGGTAACCCATGATCTGCTCATCACCTCATCTTCTATAAGCTGCATAATGCATTCTTTTGAC
CTTCAGTGATCAATTCCCTATCCTTGCAGACCAAGACAACAAGCATCAGCAGTAAGCAAATAAAAGATGGAAATATACCC
GGTCTCCAAGTTATATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38425.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis