Browse Element(s) Details


Os.28160.1.S1_at

Description gb:AK101166.1
DB_XREF= gi:32986375
TID=Os.28160.1
CNT=64
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.28160 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033117D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033028E07, full insert sequence.
FL= gb:AK062196.1 gb:AK101405.1 gb:AK101166.1 gb:AK103035.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0282011/11Elongation factor 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02754Os.14965.1.S1_at10/114+1041720..1058003Amidase family protein, expressed
LOC_Os04g02780Os.9698.1.S1_at11/114+1060492..1063545amidase family protein, putative, expressed
LOC_Os04g02790NANA4+1071751..1072062hypothetical protein
LOC_Os04g02800NANA4+1074546..1075067retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02810Os.49936.2.A1_at3/114+1076540..1077881retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02810Os.33601.3.S1_x_at1/114+1076540..1077881retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02820Os.28160.1.S1_at11/114+1080525..1085753Elongation factor 2, putative, expressed
LOC_Os04g02830OsAffx.13628.1.S1_s_at11/114+1087317..1089317Peptidyl-prolyl cis-trans isomerase 1, putative, expressed
LOC_Os04g02830OsAffx.13628.1.S1_at11/114+1087317..1089317Peptidyl-prolyl cis-trans isomerase 1, putative, expressed
LOC_Os04g02840Os.45173.1.S1_x_at6/114+1091523..1094759retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02840OsAffx.20877.1.S1_at1/114+1091523..1094759retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02850OsAffx.13629.1.S1_at11/114+1097963..1100386pentatricopeptide, putative, expressed
LOC_Os04g02850OsAffx.13326.1.S1_at1/114+1097963..1100386pentatricopeptide, putative, expressed
LOC_Os04g02860Os.38425.1.S1_at11/114+1100505..1105865NB-ARC domain containing protein, expressed
LOC_Os04g02870Os.18127.1.A1_at10/114+1107699..1112090Arginine/serine-rich splicing factor RSP41, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0003746molecular_functiontranslation elongation factor activity
GO:0008135molecular_functiontranslation factor activity, nucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28160.1.S1_at--8--2951Chr04:1085108..1085132 (25 bp)
AAGGCTGCTGGAGCCAGTCTACCTG
LOC_Os04g02820
Os.28160.1.S1_at--616--7191Chr04:1085270..1085294 (25 bp)
GTCGTTTGGGTTCTCGAGCCAGCTC
LOC_Os04g02820
Os.28160.1.S1_at--693--851Chr04:1085314..1085338 (25 bp)
AGGCCTTCCCTCAGTGTGTCTTTGA
LOC_Os04g02820
Os.28160.1.S1_at--333--9691Chr04:1085339..1085363 (25 bp)
TCACTGGGACATGATGACTTCTGAT
LOC_Os04g02820
Os.28160.1.S1_at--1051--2051Chr04:1085355..1085379 (25 bp)
ACTTCTGATCCTCTGGAGGTGAGCT
LOC_Os04g02820
Os.28160.1.S1_at--354--1051Chr04:1085371..1085395 (25 bp)
AGGTGAGCTCGCAGGCGAACCAGCT
LOC_Os04g02820
Os.28160.1.S1_at--867--1611Chr04:1085392..1085416 (25 bp)
AGCTGGTGCTGGACATCCGCAAGAG
LOC_Os04g02820
Os.28160.1.S1_at--499--8931Chr04:1085437..1085461 (25 bp)
TGACCCCTCTCTCGGATTTCGAGGA
LOC_Os04g02820
Os.28160.1.S1_at--390--2431Chr04:1085475..1085499 (25 bp)
AAAACCCTTTTGGTCTCGCATATGT
LOC_Os04g02820
Os.28160.1.S1_at--971--8771Chr04:1085497..1085521 (25 bp)
TGTTTTTGCCATTAATTTACCTGTT
LOC_Os04g02820
Os.28160.1.S1_at--329--9971Chr04:1085514..1085538 (25 bp)
TACCTGTTCTAATAGCTGTTCTACT
LOC_Os04g02820
Target Sequence 
AAGGCTGCTGGAGCCAGTCTACCTGGTGGAGATCCAGGCCCCTGAGAATGCCCTTGGCGGTATCTATGGCGTTCTGAACC
AGAAGAGAGGCCATGTGTTCGAGGAGATGCAGAGGCCCGGTACCCCGCTGTACAACATCAAGGCTTACCTCCCCGTCATC
GAGTCGTTTGGGTTCTCGAGCCAGCTCCGTGCCGCNACATCGGGCCAGGCCTTCCCTCAGTGTGTCTTTGATCACTGGGA
CATGATGACTTCTGATCCTCTGGAGGTGAGCTCGCAGGCGAACCAGCTGGTGCTGGACATCCGCAAGAGGAAGGGTCTCA
AGGAGCAGATGACCCCTCTCTCGGATTTCGAGGACAAGCTCTAAGAAAAAACCCTTTTGGTCTCGCATATGTTTTTGCCA
TTAATTTACCTGTTCTAATAGCTGTTCTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28160.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis